PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf00040g09006.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family WRKY
Protein Properties Length: 352aa    MW: 39578.7 Da    PI: 7.2835
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf00040g09006.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY107.66.4e-34188245259
                               --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                      WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                               +Dgy+WrKYGqK vk+s++prsYYrCts++C+vkk+vers +dp++v++tYeg+Hnh+
  Peinf101Scf00040g09006.1 188 EDGYRWRKYGQKAVKNSPYPRSYYRCTSQKCQVKKRVERSFQDPSIVITTYEGQHNHH 245
                               8********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.3E-35174247IPR003657WRKY domain
SuperFamilySSF1182901.26E-29179247IPR003657WRKY domain
PROSITE profilePS5081132.374182247IPR003657WRKY domain
SMARTSM007747.6E-40187246IPR003657WRKY domain
PfamPF031063.0E-26188245IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 352 aa     Download sequence    Send to blast
MADELRNFYY HQPFQEDRHS FLYSQQRASS TSGDDSSFVQ NLHMLDPSCM SYGEYIHGSS  60
CDYSTSLGKP FGFSAPSPSS EAFSNSIKDH DDIKPAAVLH VDAHNNDSIG GGSETPVTPN  120
SSISSSSTEA AADDQDSNKT STKKDKQVKD NLEDGEDTSK NKAKKKGEKK QKPPKFAFMT  180
KSEVDHLEDG YRWRKYGQKA VKNSPYPRSY YRCTSQKCQV KKRVERSFQD PSIVITTYEG  240
QHNHHLPATL RGNVARMLSP SMLLTPSPSN FHHQELIMPQ SFYGHGGSSA FGNPQSSMSM  300
YHQNLTPHHQ QLQLPPDYGL LQDMYETDIT TCFKYVNLST SKPQWKCLDG KE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-29177248778Probable WRKY transcription factor 4
2lex_A2e-29177248778Probable WRKY transcription factor 4
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00440DAPTransfer from AT4G18170Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT8276563e-62KT827656.1 Manihot esculenta WRKY transcription factor 81 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009616483.11e-143PREDICTED: probable WRKY transcription factor 71
RefseqXP_016459945.11e-143PREDICTED: probable WRKY transcription factor 71
TrEMBLA0A1S3Z6481e-142A0A1S3Z648_TOBAC; probable WRKY transcription factor 71
STRINGXP_009616483.11e-142(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA14852475
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G29860.11e-48WRKY DNA-binding protein 71