PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01047850G0010
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family Trihelix
Protein Properties Length: 298aa    MW: 31133.3 Da    PI: 4.5826
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01047850G0010genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix667.8e-21241298158
         trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenln 58 
                      rW+ +ev aLi++r+e+e r+ +  lk+plWeevs +m+++g++rs+k+Ckekwen+n
  PH01047850G0010 241 RWPTHEVEALIRVRTELEARFLEPGLKGPLWEEVSVRMAATGYRRSAKRCKEKWENIN 298
                      8*******************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138373.8E-13240298No hitNo description
CDDcd122032.03E-24240298No hitNo description
PROSITE profilePS500907.097240298IPR017877Myb-like domain
Sequence ? help Back to Top
Protein Sequence    Length: 298 aa     Download sequence    Send to blast
MMLHGGGGDD EAATESRLRR WPGDEEASIK EPTWRPLDID YIHSTSTSKR AAGKEKAATP  60
ESPAAAANYF KKGDDNAAAA SAGGGNYKLF SELEAIYKPG SGGAQTGSGS GLTGDDNAML  120
PPAMADLPGA APADAPQMNT SETSAGEDAA AESDKFAREA AARAQDRASA AAREAAIIAY  180
LEKISGETIT LPPPAPDPAP SVDNMSQDAA AGIGKELVAY DGGDAALGSG EGTALHFSTS  240
RWPTHEVEAL IRVRTELEAR FLEPGLKGPL WEEVSVRMAA TGYRRSAKRC KEKWENIN
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01047850G0010
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1200631e-63AK120063.1 Oryza sativa Japonica Group cDNA clone:J013001K22, full insert sequence.
GenBankAP0040491e-63AP004049.2 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1212_C06.
GenBankAP0067201e-63AP006720.1 Oryza sativa Japonica Group genomic DNA, chromosome 2, clone:OJA1212_C06.
GenBankAP0149581e-63AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
GenBankCP0126101e-63CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015688420.12e-85PREDICTED: uncharacterized protein LOC102721711
TrEMBLA0A0D9VB458e-91A0A0D9VB45_9ORYZ; Uncharacterized protein
STRINGLPERR02G00380.11e-91(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP63993547
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76890.22e-22Trihelix family protein