PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000171G1110
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family HD-ZIP
Protein Properties Length: 322aa    MW: 34853.5 Da    PI: 9.3697
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000171G1110genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.89e-19162216256
                      T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
         Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                      rk+ +++k+q  +Lee F++++ ++ ++++ LA++l+L+ rqV vWFqNrRa+ k
  PH01000171G1110 162 RKKLRLSKDQSAVLEESFKEHNSLNPKQKAALARQLNLKPRQVEVWFQNRRARTK 216
                      788899***********************************************98 PP
2HD-ZIP_I/II124.64.5e-40162251191
      HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                      +kk+rlsk+q+++LEesF+e++ L+p++K++lar+L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr +++l++en+rL+ke +eLr +l
  PH01000171G1110 162 RKKLRLSKDQSAVLEESFKEHNSLNPKQKAALARQLNLKPRQVEVWFQNRRARTKLKQTEVDCEFLKRFCETLTAENRRLHKEAQELR-AL 251
                      69*************************************************************************************9.55 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046182.2E-2417137IPR006712HD-ZIP protein, N-terminal
Gene3DG3DSA:1.10.10.603.4E-19143216IPR009057Homeodomain-like
SuperFamilySSF466891.15E-18149219IPR009057Homeodomain-like
PROSITE profilePS5007117.086158218IPR001356Homeobox domain
SMARTSM003896.2E-17160222IPR001356Homeobox domain
PfamPF000463.6E-16162216IPR001356Homeobox domain
CDDcd000862.08E-17162219No hitNo description
PROSITE patternPS000270193216IPR017970Homeobox, conserved site
PfamPF021832.3E-9218252IPR003106Leucine zipper, homeobox-associated
SMARTSM003404.5E-21218261IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 322 aa     Download sequence    Send to blast
MEMIVNGRDE QYHHHHHLGL SLSLSIAGTT APVVEAPQRA LSVAPIPSIP AAPPPQCWNG  60
AGLLFSHSAG DQQRAGACMH ADPRAAACHE MPFLRGIDVN RAPAGERPGS YSEEGEEPGA  120
SSPNSTLSSL SGKRGAPARS GGEQEMRPGS DDEDSGAGGG SRKKLRLSKD QSAVLEESFK  180
EHNSLNPKQK AALARQLNLK PRQVEVWFQN RRARTKLKQT EVDCEFLKRF CETLTAENRR  240
LHKEAQELRA LKFVPPQLYM RMPPPTTLTM CPSCERLVSG SAGKPDAAAE GRPALARPVP  300
SGPWGPVPPR PMFLHRPSQR S*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1160166SRKKLRL
2210218RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription repressor involved leaf development. Binds to the DNA sequence 5'-CAAT[GC]ATTG-3'. May act as a regulatory switch to specify provascular cell fate. {ECO:0000269|PubMed:10732669, ECO:0000269|PubMed:10934011, ECO:0000269|PubMed:9076993}.
UniProtProbable transcription repressor involved leaf development. Binds to the DNA sequence 5'-CAAT[GC]ATTG-3'. May act as a regulatory switch to specify provascular cell fate. {ECO:0000269|PubMed:10732669, ECO:0000269|PubMed:9076993}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000171G1110
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin and sucrose in primary root apical region. By wounding in leaves. {ECO:0000269|PubMed:10732669}.
UniProtINDUCTION: By auxin and sucrose in primary root apical region. By wounding in leaves. {ECO:0000269|PubMed:10934011}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3669661e-154AK366966.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2049C06.
GenBankAK3685491e-154AK368549.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2075M23.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025795353.11e-129homeobox-leucine zipper protein HOX1-like
SwissprotQ406913e-86HOX1_ORYSI; Homeobox-leucine zipper protein HOX1
SwissprotQ7XC543e-86HOX1_ORYSJ; Homeobox-leucine zipper protein HOX1
TrEMBLA0A3B5Y1E31e-129A0A3B5Y1E3_WHEAT; Uncharacterized protein
STRINGPavir.Ia02217.1.p1e-133(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP25873889
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44910.13e-61homeobox-leucine zipper protein 4
Publications ? help Back to Top
  1. Scarpella E,Boot KJ,Rueb S,Meijer AH
    The procambium specification gene Oshox1 promotes polar auxin transport capacity and reduces its sensitivity toward inhibition.
    Plant Physiol., 2002. 130(3): p. 1349-60
    [PMID:12428000]
  2. Scarpella E,Rueb S,Meijer AH
    The RADICLELESS1 gene is required for vascular pattern formation in rice.
    Development, 2003. 130(4): p. 645-58
    [PMID:12505996]
  3. Rice Chromosome 10 Sequencing Consortium
    In-depth view of structure, activity, and evolution of rice chromosome 10.
    Science, 2003. 300(5625): p. 1566-9
    [PMID:12791992]
  4. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  5. Scarpella E,Simons EJ,Meijer AH
    Multiple regulatory elements contribute to the vascular-specific expression of the rice HD-Zip gene Oshox1 in Arabidopsis.
    Plant Cell Physiol., 2005. 46(8): p. 1400-10
    [PMID:15964905]
  6. Meijer AH,Ouwerkerk PB,Hoge JH
    Vectors for transcription factor cloning and target site identification by means of genetic selection in yeast.
    Yeast, 1998. 14(15): p. 1407-15
    [PMID:9848232]