PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000105G0910
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family CPP
Protein Properties Length: 792aa    MW: 85180.1 Da    PI: 7.3601
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000105G0910genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR27.37.2e-095175421641
              TCR  16 kYCeCfaagkkCseeCkCedCkNkee 41 
                       YCeCf+ag++Cse C+C++C Nk +
  PH01000105G0910 517 CYCECFHAGVFCSEPCSCQGCLNKPS 542
                      6**********************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011146.9E-8486543IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163418.964487608IPR005172CRC domain
PfamPF036385.1E-6516540IPR005172CRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009934Biological Processregulation of meristem structural organization
GO:0048444Biological Processfloral organ morphogenesis
GO:0051302Biological Processregulation of cell division
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 792 aa     Download sequence    Send to blast
MRSDLVSLVQ LLLCISMGNA SYLDAHVVWA EISAAFSLDD SPVFNFINSL SPIQPPKPLD  60
SAHNVQLFKS SDLAPVSSIF ASPHVNPAKE SKLLIRDDSV RLSQESNSPN SIRTRIGTTS  120
SIRLIKHKNI VSENCSVTCY LNEASIDSSD NTSNSTSNLP QSIQLGGGSA ESDKNQNADG  180
KTDLSTDQQC TEQEGVLLDQ SDPDKMDSSH SGRNAHENQL HERHKDELVA YGEGYLITHQ  240
LCSDMLRLAP PFEAEKQLVN ETLKADNAYS CKSLLTGGSS GSYICNSAHD PHLYWSGAVE  300
GSATDYTPQM LPGACQSQLV SNDQICNKLN EPSDHMPMDQ NALSQDLRGM RRRCLFNEKA  360
GAINKGFKNT SDCHSANSTT PRRKTISGDN NSKPPRTPPC ALPGIGLHLN ALATIPKDKV  420
VPHDAKTSIN QVSNHPCAIG SCPPTYGPNI INDDSSQITM VANADDESGQ GSPKKKRLKF  480
DNGDGASCKR CSCKKSKCLK LSPANSYGIV EKFLLHCYCE CFHAGVFCSE PCSCQGCLNK  540
PSNMETVLST REQIESRNPL AFAPKVIRTS EPGQESGPSC IFLLLLFIKG GVGCSISCRC  600
EGCKNAFGRR EGVAVLSIEE AKQGYEEKNA CVKEGKSESD KQLVIHQVTD LAPAENVLTT  660
PSVVDCRPLA ALPPSCSKKP RSSTKLIGCS SRLHKSQAPL KSDIVLSPFE SYAEMILGEG  720
TSDTLKGNSP PQTSVKVVSP NKKRISPLRI GTGLSPICKS GRKLILKSIP SFPSLSGDVN  780
NEDPKSSLPA P*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00624PBMTransfer from PK22848.1Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000105G0910
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0993720.0FP099372.1 Phyllostachys edulis cDNA clone: bphylf024b18, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020189110.10.0protein tesmin/TSO1-like CXC 2
TrEMBLA0A3B6KCM40.0A0A3B6KCM4_WHEAT; Uncharacterized protein
TrEMBLA0A446SQ040.0A0A446SQ04_TRITD; Uncharacterized protein
STRINGTraes_5AS_282747CEF.20.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP127462630
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22780.14e-53Tesmin/TSO1-like CXC domain-containing protein