PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000064G1570
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family MYB
Protein Properties Length: 603aa    MW: 66581.7 Da    PI: 5.313
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000064G1570genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding33.51e-102799348
                     SS-HHHHHHHHHHHHHTTTT............................-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg............................tWktIartmgkgRtlkqcksrwqkyl 48
                     +W++eEd+ l   ++ +G++                            +W+ +a+ +   +t+ qc+ rw++yl
  PH01000064G1570 27 SWSAEEDDVLRAQIAHHGTDkygffallisikllpsrfnhhgfhlsfgSWTIVAAQFK-DKTARQCRRRWYNYL 99
                     6********************************************************9.**************7 PP
2Myb_DNA-binding409.2e-13105148146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      +g W+ eEd ll +a k lG++ W+ Ia+ +  gRt++ +k+r+ +
  PH01000064G1570 105 KGGWSREEDMLLCEAQKVLGNK-WTEIAKVVS-GRTDNAVKNRFST 148
                      688*******************.*********.**********965 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007175.3E-824101IPR001005SANT/Myb domain
PROSITE profilePS500908.5712799IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.602.6E-112787IPR009057Homeodomain-like
CDDcd001671.57E-62799No hitNo description
PfamPF139212.6E-1128116No hitNo description
SuperFamilySSF466891.15E-2479157IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.5E-2388147IPR009057Homeodomain-like
PROSITE profilePS5129419.328100154IPR017930Myb domain
SMARTSM007171.1E-12104152IPR001005SANT/Myb domain
CDDcd001671.92E-9108149No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009553Biological Processembryo sac development
GO:0010052Biological Processguard cell differentiation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 603 aa     Download sequence    Send to blast
MATGPDLSTS TGLAAAPAAK KDRHIVSWSA EEDDVLRAQI AHHGTDKYGF FALLISIKLL  60
PSRFNHHGFH LSFGSWTIVA AQFKDKTARQ CRRRWYNYLN SECKKGGWSR EEDMLLCEAQ  120
KVLGNKWTEI AKVVSGRTDN AVKNRFSTLS KKRAKDEELF KENGALCSNA NAKRVLTQTG  180
CLTSGAAGSS PPTKQMRYCK PDFKENIAPN TRLFGQEKST QQDSRHPLAI VSPNNQVNVN  240
IVETQNLVAK TTTEQLFGGE QNCVKHEGNF LKKDDPKFAT LMQQADLLCS LATKINTENT  300
SQIMDEAWQK LQHHLVKKDD NDMSESSMSG IASLLEELDD LIVDPYENEK EDEHKSREQN  360
GQIDVDNKQS NSPSQASMEV LSQIAPDQKT DDYPVDKSTE DNSLCTNVLS SSMEPCPGAE  420
IPASVNLSEA AEDIRLQCME YTSPAHTVLQ AKADAEITES DSFSEVAEDS RFQCMEWTSP  480
AHTVLQAKAD AEIPASENFS EVAKDTKLQC IEFNSPAHTT IQAKVGAEIP TSKNFCEVAE  540
HSRLPCMEFT SPAHTVPTFQ PYSDDMPTPK ITASVCMGSN SKPAMLLSMY ILAALHLVLS  600
RV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A5e-247615330107B-MYB
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00259DAPTransfer from AT2G02820Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000064G1570
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025882808.10.0transcription factor MYB124 isoform X1
TrEMBLA0A0E0AMZ90.0A0A0E0AMZ9_9ORYZ; Uncharacterized protein
STRINGOGLUM07G22980.20.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP89033847
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02820.11e-79myb domain protein 88