PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.D02021.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family M-type_MADS
Protein Properties Length: 184aa    MW: 20042 Da    PI: 9.2695
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.D02021.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF58.21e-181658345
                    --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
          SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                    i++  + +vtfskR+ g+lKKA+ELS LC+a va ++fs+ g+
  Pahal.D02021.1 16 IKDADRLEVTFSKRKSGLLKKASELSLLCGAHVAFVVFSPGGR 58
                    7889999********************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.8E-25665IPR002100Transcription factor, MADS-box
PROSITE profilePS5006623.24666IPR002100Transcription factor, MADS-box
SuperFamilySSF554559.81E-23778IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-16828IPR002100Transcription factor, MADS-box
PfamPF003194.4E-201660IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-162843IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-164364IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 184 aa     Download sequence    Send to blast
MGRPSKGRQR IEIRLIKDAD RLEVTFSKRK SGLLKKASEL SLLCGAHVAF VVFSPGGRAF  60
ALGTPSVDHV LRRFDPLPGD EDDGDLLALL QDGDGVSATA DRGAVEAIVR RTEETKARVA  120
AEKVRMDAVG EKVRQAMIKA GGKFWWEADV EALGEAELPE FARALRRLRD NVQRHVDLLL  180
ASA*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025811768.11e-127agamous-like MADS-box protein AGL62
TrEMBLA0A2S3HIR91e-125A0A2S3HIR9_9POAL; Uncharacterized protein
TrEMBLA0A2T7DXP11e-125A0A2T7DXP1_9POAL; Uncharacterized protein
STRINGPavir.J16245.1.p1e-110(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP28333088
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.13e-29AGAMOUS-like 62