PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.B02020.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family M-type_MADS
Protein Properties Length: 347aa    MW: 37598.2 Da    PI: 11.0393
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.B02020.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF72.43.9e-23152196246
                     ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEE CS
          SRF-TF   2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkl 46 
                     rienk +rqvtfskR++g+lKKA+ELS LC+a +av+ifs++++l
  Pahal.B02020.1 152 RIENKERRQVTFSKRKAGVLKKASELSLLCGAHAAVVIFSKKQEL 196
                     8*****************************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006622.539143196IPR002100Transcription factor, MADS-box
SMARTSM004322.1E-24143202IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.83E-19143197IPR002100Transcription factor, MADS-box
PRINTSPR004042.1E-16145165IPR002100Transcription factor, MADS-box
PfamPF003194.3E-21152196IPR002100Transcription factor, MADS-box
PRINTSPR004042.1E-16165180IPR002100Transcription factor, MADS-box
PRINTSPR004042.1E-16180201IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 347 aa     Download sequence    Send to blast
MSNTRKSCCL ADDRFFVEDG DRERSLSLIS TLHRDANNDG AARFFLKIDS RVRLGVGLHL  60
RRLPVPAAVP VRRPTFTSSS SKFLPFLAML PPTYTPSPPL LRSFHSTERV ALERSRGSKK  120
QSSRSRVVLR CATMVKPEGK KTKGKQVIEI RRIENKERRQ VTFSKRKAGV LKKASELSLL  180
CGAHAAVVIF SKKQELPQGG GEAGRASGGG NVLAMGTPSV DHVLRRFAPL PGDAYLPALE  240
DVGGAAERAT VEATVRQTEE TKARVAAEAA RMSAIGAMVL TAVPAGRERF WWEADVEALG  300
EAELPEFARA LQRLRDYVRR HAGKLQPSAA PAGTDGAGQP QASLNV*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025813513.11e-149agamous-like MADS-box protein AGL62
TrEMBLA0A2S3HJB70.0A0A2S3HJB7_9POAL; Uncharacterized protein
STRINGPavir.J38547.1.p1e-104(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP28333088
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.18e-15AGAMOUS-like 62