PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG029666.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

Nin-like

Protein Properties

Length: 1004aa MW: 110522 Da PI: 5.8795

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG029666.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	89.3	3.1e-28	592	643	1	52
RWP-RK 1 aekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 aek isle+l++yF +++kdAA +Lgvc+T++KriCRq+GI+RWP+Rkik++ CCG029666.1 592 AEKMISLEVLQQYFTGSLKDAAMSLGVCPTTMKRICRQHGISRWPSRKIKKV 643 5899**********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.587	578	663	IPR003035	RWP-RK domain
Pfam	PF02042	4.1E-25	596	643	IPR003035	RWP-RK domain
SuperFamily	SSF54277	2.19E-21	901	992	No hit	No description
PROSITE profile	PS51745	22.609	908	990	IPR000270	PB1 domain
SMART	SM00666	1.8E-24	908	990	IPR000270	PB1 domain
Gene3D	G3DSA:3.10.20.240	1.7E-25	908	990	No hit	No description
CDD	cd06407	8.79E-36	909	989	No hit	No description
Pfam	PF00564	5.4E-17	909	989	IPR000270	PB1 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 1004 aa Download sequence Send to blast
MPEPTEVGGG GESEGRKSME LDLDLDSSWP LEQISFISSN PMSPFLISSS NEQPCSPLWA 60 FSDAADDRLL AAAGAAAGQA SSSLVGGLRL SDNPIVLTCN PNSVTESKGE NDDNSKLPSP 120 FLGLWPIDNP DGYCIIKERM TRALRHFKES TEQHILAQVW APVKNGGRYA LTTSGQPFVI 180 DPHSNGLHQY RMVSLMYKFS VDGESDGELG LPGRVFRQKL PEWTPNVQYY SSKEYPRLDH 240 AIHYNVRGTV ALPVFEPSGQ SCVGVVELIM NSHKINYAPE VDKVCKALEA VDLKSSEILD 300 PPSTQICNEG RQNALAEILE ILTMVCETHK LPLAQTWVPC MHRSVLAYGG GLKKSCTSFD 360 GSCNGQVCMS TTDVAFYVVD AHMWGFREAC LEHHLQKGQG VAGRAFFSHN LCFCPDITQF 420 RKTEYPLVHY ARMFGLTSCF AICLRSSYTG DDDYILEFFL PPSITDSREW KTLLGSILAI 480 MKQDFQSLKV ASGMELEEEE GFVEMIQVST NGRLDLGLEC IQIPQSTKSP PDDNALLNGP 540 IVQIYPEKNQ LMFDLDVIKN GGSAVQADVT QTHASLTEKE TKMPKERKRG KAEKMISLEV 600 LQQYFTGSLK DAAMSLGVCP TTMKRICRQH GISRWPSRKI KKVNRSLSKL KRVIESVQGT 660 EGAFSFRTHQ TPLTTSSLPV ADGTISWPPN LNESNQQNSP NSKSPEHQGD KNGSPTCRTP 720 GSDVKAVFED QLLGCRKLSL EELTVQNRFS PELGKCSNRS KTRGGSRDES AGTPTSHGSC 780 QGCPENESAP AKDPSVSPVH KRGVKAGGSK KLALQQTREL NLSAAYSIPN AFFAAEAQEQ 840 FGGMLIEDTG SSKDLSNLCP AMADAIVVER VPESKWTDPL CSDINPTQMI AALSIAMPHV 900 TSRQEMNSVT IKATYREDKI RFRISLSSGI AELKEEVAKR LRLEVGTFDI KYLDDDHEWV 960 LIARDADLHE CMDVSRSSNS NMIRVSVHDT NANLGSSCES TWEI

Sequence ? help Back to Top

Protein Sequence Length: 1004 aa Download sequence Send to blast

MPEPTEVGGG GESEGRKSME LDLDLDSSWP LEQISFISSN PMSPFLISSS NEQPCSPLWA  60
FSDAADDRLL AAAGAAAGQA SSSLVGGLRL SDNPIVLTCN PNSVTESKGE NDDNSKLPSP  120
FLGLWPIDNP DGYCIIKERM TRALRHFKES TEQHILAQVW APVKNGGRYA LTTSGQPFVI  180
DPHSNGLHQY RMVSLMYKFS VDGESDGELG LPGRVFRQKL PEWTPNVQYY SSKEYPRLDH  240
AIHYNVRGTV ALPVFEPSGQ SCVGVVELIM NSHKINYAPE VDKVCKALEA VDLKSSEILD  300
PPSTQICNEG RQNALAEILE ILTMVCETHK LPLAQTWVPC MHRSVLAYGG GLKKSCTSFD  360
GSCNGQVCMS TTDVAFYVVD AHMWGFREAC LEHHLQKGQG VAGRAFFSHN LCFCPDITQF  420
RKTEYPLVHY ARMFGLTSCF AICLRSSYTG DDDYILEFFL PPSITDSREW KTLLGSILAI  480
MKQDFQSLKV ASGMELEEEE GFVEMIQVST NGRLDLGLEC IQIPQSTKSP PDDNALLNGP  540
IVQIYPEKNQ LMFDLDVIKN GGSAVQADVT QTHASLTEKE TKMPKERKRG KAEKMISLEV  600
LQQYFTGSLK DAAMSLGVCP TTMKRICRQH GISRWPSRKI KKVNRSLSKL KRVIESVQGT  660
EGAFSFRTHQ TPLTTSSLPV ADGTISWPPN LNESNQQNSP NSKSPEHQGD KNGSPTCRTP  720
GSDVKAVFED QLLGCRKLSL EELTVQNRFS PELGKCSNRS KTRGGSRDES AGTPTSHGSC  780
QGCPENESAP AKDPSVSPVH KRGVKAGGSK KLALQQTREL NLSAAYSIPN AFFAAEAQEQ  840
FGGMLIEDTG SSKDLSNLCP AMADAIVVER VPESKWTDPL CSDINPTQMI AALSIAMPHV  900
TSRQEMNSVT IKATYREDKI RFRISLSSGI AELKEEVAKR LRLEVGTFDI KYLDDDHEWV  960
LIARDADLHE CMDVSRSSNS NMIRVSVHDT NANLGSSCES TWEI

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in regulation of nitrate assimilation and in transduction of the nitrate signal. {ECO:0000269\|PubMed:18826430}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Not regulated by the N source or by nitrate. {ECO:0000269\|PubMed:18826430}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011026836.1	0.0	PREDICTED: protein NLP7-like isoform X2
Swissprot	Q84TH9	0.0	NLP7_ARATH; Protein NLP7
TrEMBL	A0A2K2BUQ7	0.0	A0A2K2BUQ7_POPTR; Uncharacterized protein
STRING	POPTR_0001s10970.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4257	34	56

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24020.1	0.0	NIN like protein 7

Publications ? help Back to Top
Xu N, et al. The Arabidopsis NRG2 Protein Mediates Nitrate Signaling and Interacts with and Regulates Key Nitrate Regulators. Plant Cell, 2016. 28(2): p. 485-504 [PMID:26744214] Karve R,Suárez-Román F,Iyer-Pascuzzi AS The Transcription Factor NIN-LIKE PROTEIN7 Controls Border-Like Cell Release. Plant Physiol., 2016. 171(3): p. 2101-11 [PMID:27221617] Yu LH, et al. Overexpression of Arabidopsis NLP7 improves plant growth under both nitrogen-limiting and -sufficient conditions by enhancing nitrogen and carbon assimilation. Sci Rep, 2016. 6: p. 27795 [PMID:27293103] Menz J,Li Z,Schulze WX,Ludewig U Early nitrogen-deprivation responses in Arabidopsis roots reveal distinct differences on transcriptome and (phospho-) proteome levels between nitrate and ammonium nutrition. Plant J., 2016. 88(5): p. 717-734 [PMID:27419465] Yan D, et al. NIN-like protein 8 is a master regulator of nitrate-promoted seed germination in Arabidopsis. Nat Commun, 2016. 7: p. 13179 [PMID:27731416] Guan P, et al. Interacting TCP and NLP transcription factors control plant responses to nitrate availability. Proc. Natl. Acad. Sci. U.S.A., 2017. 114(9): p. 2419-2424 [PMID:28202720] Liu KH, et al. Discovery of nitrate-CPK-NLP signalling in central nutrient-growth networks. Nature, 2017. 545(7654): p. 311-316 [PMID:28489820] Li Z, et al. The Arabidopsis CPSF30-L gene plays an essential role in nitrate signaling and regulates the nitrate transceptor gene NRT1.1. New Phytol., 2017. 216(4): p. 1205-1222 [PMID:28850721] Cao H, et al. Overexpression of the Maize ZmNLP6 and ZmNLP8 Can Complement the Arabidopsis Nitrate Regulatory Mutant nlp7 by Restoring Nitrate Signaling and Assimilation. Front Plant Sci, 2017. 8: p. 1703 [PMID:29051766] Konishi N,Okubo T,Yamaya T,Hayakawa T,Minamisawa K Nitrate Supply-Dependent Shifts in Communities of Root-Associated Bacteria in Arabidopsis. Microbes Environ., 2017. 32(4): p. 314-323 [PMID:29187692] Karve RA,Iyer-Pascuzzi AS Further insights into the role of NIN-LIKE PROTEIN 7 (NLP7) in root cap cell release. Plant Signal Behav, 2018. 13(1): p. e1414122 [PMID:29215953] Zhao L, et al. The Arabidopsis NLP7 gene regulates nitrate signaling via NRT1.1-dependent pathway in the presence of ammonium. Sci Rep, 2018. 8(1): p. 1487 [PMID:29367694]