PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG028200.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

HB-other

Protein Properties

Length: 474aa MW: 52474.4 Da PI: 6.3828

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG028200.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	21.4	4.2e-07	374	407	19	50
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqN 50 Fe ++yps ++ LA+++gL+ qV++WF N CCG028200.1 374 FEHflHPYPSDTDEHLLATQTGLSRHQVSNWFIN 407 664459**************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	9.054	352	407	IPR001356	Homeobox domain
SMART	SM00389	0.0013	355	419	IPR001356	Homeobox domain
CDD	cd00086	7.92E-8	355	408	No hit	No description
SuperFamily	SSF46689	2.01E-12	356	415	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	6.1E-20	358	408	IPR009057	Homeodomain-like
Pfam	PF05920	1.3E-13	372	408	IPR008422	Homeobox KN domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 474 aa Download sequence Send to blast
MISISLLTFA TSSDVLSAQR DAMVEQELCP AQLNSPIAAD DSLFTNTSHP VLSNLNASPT 60 ANSGDAQECG NWRKLGSEQS YDLSVDYAGV SVIGERNQKL MSAGEVICWG IKIIRSGRLI 120 GSAKECVLHP ASGNHSTALH FNNFDAWIRK PTENSHQGSD ELVLNTRKTS QELRTIPSDA 180 ITQGLSPSLP SNRPSKLNGT QFAEAYESEC LESKNGFSKE PHDDSKVSSQ LKSYWRNSVV 240 LIVKGLKLIR ACELPKRRGE GARPPRLSDT VNESDTGDEA NDDNNLGALL FNFRRSNEEF 300 GDCGVRNISS ESYRPDYRQM KAKRLLLLDE QASNKSRRRE SVLKYIYLKS LEHIWRPQRG 360 LPEHALVVLR AWLFEHFLHP YPSDTDEHLL ATQTGLSRHQ VSNWFINAGC ASGNQWLKKY 420 TLETKDLLEN NQVSGKNVGD SAEGSMQPDG ASGGMQWRST GSGGESREEM ESGV

Sequence ? help Back to Top

Protein Sequence Length: 474 aa Download sequence Send to blast

MISISLLTFA TSSDVLSAQR DAMVEQELCP AQLNSPIAAD DSLFTNTSHP VLSNLNASPT  60
ANSGDAQECG NWRKLGSEQS YDLSVDYAGV SVIGERNQKL MSAGEVICWG IKIIRSGRLI  120
GSAKECVLHP ASGNHSTALH FNNFDAWIRK PTENSHQGSD ELVLNTRKTS QELRTIPSDA  180
ITQGLSPSLP SNRPSKLNGT QFAEAYESEC LESKNGFSKE PHDDSKVSSQ LKSYWRNSVV  240
LIVKGLKLIR ACELPKRRGE GARPPRLSDT VNESDTGDEA NDDNNLGALL FNFRRSNEEF  300
GDCGVRNISS ESYRPDYRQM KAKRLLLLDE QASNKSRRRE SVLKYIYLKS LEHIWRPQRG  360
LPEHALVVLR AWLFEHFLHP YPSDTDEHLL ATQTGLSRHQ VSNWFINAGC ASGNQWLKKY  420
TLETKDLLEN NQVSGKNVGD SAEGSMQPDG ASGGMQWRST GSGGESREEM ESGV

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A2K2AY43	1e-117	A0A2K2AY43_POPTR; Uncharacterized protein
STRING	POPTR_0004s22310.1	1e-117	(Populus trichocarpa)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G27990.1	8e-29	BEL1-like homeodomain 8