PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG027915.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family GATA
Protein Properties Length: 246aa    MW: 27430 Da    PI: 6.3121
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG027915.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA56.82.9e-18163197135
         GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                  Cs+C + kTp+WR gp g+ktLCnaCG++y++ +l
  CCG027915.1 163 CSHCASEKTPQWRTGPLGPKTLCNACGVRYKSGRL 197
                  *******************************9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169921.7E-721244IPR016679Transcription factor, GATA, plant
SMARTSM004012.2E-16157207IPR000679Zinc finger, GATA-type
PROSITE profilePS5011411.714157193IPR000679Zinc finger, GATA-type
SuperFamilySSF577169.03E-15160220No hitNo description
Gene3DG3DSA:3.30.50.107.3E-14161195IPR013088Zinc finger, NHR/GATA-type
CDDcd002022.03E-14162209No hitNo description
PfamPF003203.9E-16163197IPR000679Zinc finger, GATA-type
PROSITE patternPS003440163188IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009416Biological Processresponse to light stimulus
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 246 aa     Download sequence    Send to blast
MDVYGGVSTS APDYFLIDDL LDFSNDDLLA SSTEHHHLPP PETSSIRHHH RHFPSPTTYI  60
NNTSSLSTDF TDHLSVPSDD VADLEWLSQF MEDSFTDFPS TINIPTDTSS RNKSCSERSR  120
TTTTATSSSA DIETAVARES RLEKENNGAP HSSAETEGGA RRCSHCASEK TPQWRTGPLG  180
PKTLCNACGV RYKSGRLVPE YRPAASPTFV LTQHSNSHRK VLELRRQKEM TLRQQQQHGY  240
QGYEVC
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes. {ECO:0000269|PubMed:12139008}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011017443.10.0PREDICTED: GATA transcription factor 4-like
SwissprotO497412e-65GATA2_ARATH; GATA transcription factor 2
TrEMBLB9GPB11e-147B9GPB1_POPTR; GATA transcription factor
STRINGPOPTR_0002s14380.11e-148(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF135501925
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60530.13e-61GATA transcription factor 4
Publications ? help Back to Top
  1. Jiang K,Yung V,Chiba T,Feldman LJ
    Longitudinal patterning in roots: a GATA2-auxin interaction underlies and maintains the root transition domain.
    Planta, 2018. 247(4): p. 831-843
    [PMID:29249045]