PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG026940.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family TALE
Protein Properties Length: 586aa    MW: 64558.3 Da    PI: 6.7564
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG026940.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox277.4e-095085461854
                  HHHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
     Homeobox  18 lFek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                  +F++  ++yp+ +e+  LA+k gLt +qV++WF N R +
  CCG026940.1 508 MFQNflHPYPKDAEKHLLAAKSGLTRSQVSNWFINARVR 546
                  5887779******************************88 PP
2BELL78.31.1e-25380449272
         BELL   2 rqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                  +++l++k+++Ll+ll+ Vd+rY+q+ ++++tvis+F+a+++l++ +++t++ l++iS+ ++ L+++i++qi
  CCG026940.1 380 KRALEAKRTQLLTLLQLVDERYSQCLDEIHTVISAFHAATELDP-QIHTRFSLQTISFLYKRLRERISNQI 449
                  6899****************************************.*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005741.2E-23303447IPR006563POX domain
PfamPF075262.1E-25308446IPR006563POX domain
PROSITE profilePS5007111.224487550IPR001356Homeobox domain
SMARTSM003892.2E-6490554IPR001356Homeobox domain
CDDcd000861.10E-11490551No hitNo description
SuperFamilySSF466891.88E-15492559IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.6E-26493556IPR009057Homeodomain-like
PfamPF059202.7E-15507546IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008285Biological Processnegative regulation of cell proliferation
GO:0009640Biological Processphotomorphogenesis
GO:0010073Biological Processmeristem maintenance
GO:0010227Biological Processfloral organ abscission
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0010371Biological Processregulation of gibberellin biosynthetic process
GO:0090470Biological Processshoot organ boundary specification
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 586 aa     Download sequence    Send to blast
MENGLFSVPI DMAGRNSVTM DCSSQRTPNS LVQLDSFNLN HHNQTSAGFT MLPTLQGEPI  60
SDLHANIHSA NQSSFMNSDA LVASLGRNVV GDTLPGCSRS AGNPPFQEQF GGGIPNYALA  120
TLVATRSGLQ ETLNNLAISG PSSYPLEVSR SFVSNDCTNA LNSSFASSLN YGCGEVFGST  180
NGKEDFDRFP APIELGGRTP LRAGFQPHSS VGNLQPNGWI TSNGVNVSAD ECFASGKLTN  240
ELSLSLATSQ PSVMDSRSIP DQSSEITLNH VARHFSKETR LGSEQTSCSS KELSLSCSSS  300
KTGQSSQVLL GSRYLHVIQE ILAQIASYSL ENLDQGFKTG ASTLFSSSYI MEGGFPLMGF  360
YKSPDGNDRL DVQMDPALQK RALEAKRTQL LTLLQLVDER YSQCLDEIHT VISAFHAATE  420
LDPQIHTRFS LQTISFLYKR LRERISNQIL AMGAHLDSGN TIETEGSFGT SYLQKQWTLQ  480
QLKKNDHQLW RPQRGLPERS VSVLRAWMFQ NFLHPYPKDA EKHLLAAKSG LTRSQVSNWF  540
INARVRLWKP MIEEMYAEMN RRKAHQNEEG TNSNHRISIS AIQDLM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4xrs_A5e-15496553158Homeobox protein Meis1
4xrs_B5e-15496553158Homeobox protein Meis1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor which may be involved in the signal transduction pathway downstream of the COP1 gene. Controls floral competency as a specific activator of FLC expression. Is responsive of the nuclear import of SHOOT MERISTEMLESS (STM). {ECO:0000269|PubMed:17908157}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By light. In etiolated seedlings, maximally expressed after 3 days of illumination.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011009702.10.0PREDICTED: homeobox protein ATH1-like isoform X1
RefseqXP_011009703.10.0PREDICTED: homeobox protein ATH1-like isoform X1
RefseqXP_011009704.10.0PREDICTED: homeobox protein ATH1-like isoform X1
RefseqXP_011009705.10.0PREDICTED: homeobox protein ATH1-like isoform X1
SwissprotP487311e-117ATH1_ARATH; Homeobox protein ATH1
TrEMBLA0A2K1WW980.0A0A2K1WW98_POPTR; Uncharacterized protein
STRINGPOPTR_0018s05080.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF59393249
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32980.11e-105homeobox gene 1
Publications ? help Back to Top
  1. Khan M, et al.
    Repression of Lateral Organ Boundary Genes by PENNYWISE and POUND-FOOLISH Is Essential for Meristem Maintenance and Flowering in Arabidopsis.
    Plant Physiol., 2015. 169(3): p. 2166-86
    [PMID:26417006]