![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | CCG026915.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
|
||||||||
Family | S1Fa-like | ||||||||
Protein Properties | Length: 89aa MW: 9818.56 Da PI: 10.4818 | ||||||||
Description | S1Fa-like family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | S1FA | 139.4 | 7.8e-44 | 24 | 89 | 5 | 70 |
S1FA 5 kveakGlnPGlivllvvgglllvflvgnyilyvyaqknlPPrkkkPvskkklkreklkqGvavPGe 70 +e kGlnPGlivllv+gglll flvgn++ly+yaqk+lPPrkkkPvskkk+kre+lkqGv++PGe CCG026915.1 24 DAEPKGLNPGLIVLLVIGGLLLSFLVGNFVLYTYAQKTLPPRKKKPVSKKKMKRERLKQGVSAPGE 89 6799*************************************************************8 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04689 | 1.4E-40 | 25 | 89 | IPR006779 | DNA binding protein S1FA |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 89 aa Download sequence Send to blast |
MADDFEFSDQ SPPSFQNMGN VIKDAEPKGL NPGLIVLLVI GGLLLSFLVG NFVLYTYAQK 60 TLPPRKKKPV SKKKMKRERL KQGVSAPGE |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | DNA-binding protein that specifically recognizes a negative element (S1F) within the RPS1 promoter. {ECO:0000250}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | EF144583 | 1e-140 | EF144583.1 Populus trichocarpa clone WS01111_F03 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_011004618.1 | 3e-58 | PREDICTED: DNA-binding protein S1FA-like | ||||
Swissprot | Q7XLX6 | 7e-16 | S1FA2_ORYSJ; DNA-binding protein S1FA2 | ||||
TrEMBL | A9P8W5 | 7e-41 | A9P8W5_POPTR; S1Fa-like family protein | ||||
STRING | POPTR_0016s08890.1 | 1e-41 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5409 | 33 | 55 |
Publications ? help Back to Top | |||
---|---|---|---|
|