PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG025789.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

STAT

Protein Properties

Length: 728aa MW: 82750.6 Da PI: 5.6199

Description

STAT family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG025789.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	STAT	194	1.5e-60	220	337	1	118
STAT 1 ldvvllnalgqpvekdvevvasLlyadsglvveksddaeapLLisydGvefssedrplkllrGrasfklkisqLsskcdnrLfrikfeipklkkypfl 98 ldvvllna++q+++k++e+vasL+yad+gl+vek+ d+e+pLL+s+dGvefs++drp kll+Gras+klkisqLsskcdnrLfr+k+eipk+ y+fl CCG025789.1 220 LDVVLLNAMSQAINKELEIVASLVYADNGLPVEKTFDDEDPLLTSCDGVEFSNYDRPGKLLHGRASLKLKISQLSSKCDNRLFRVKLEIPKFIGYHFL 317 8*********************************************************************************************** PP STAT 99 eavskpirCisrsrntrsss 118 ea+s+pirCisrsrn r+s CCG025789.1 318 EAFSHPIRCISRSRNPRTSL 337 *************99764 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.60.120.200	1.2E-5	10	145	IPR013320	Concanavalin A-like lectin/glucanase domain
Gene3D	G3DSA:3.30.505.10	5.2E-6	623	693	IPR000980	SH2 domain
SuperFamily	SSF55550	1.49E-8	624	711	IPR000980	SH2 domain
PROSITE profile	PS50001	9.781	630	712	IPR000980	SH2 domain

Sequence ? help Back to Top
Protein Sequence Length: 728 aa Download sequence Send to blast
MGSRNNNNNV INRKDYILLK DFRMEIEVEN EKDLSLSFWV YLIDSSTTTF PATIIKQVYP 60 DITSNAPFLV LNDKIITLFP LLHAHKETTN SSNSTSMEIK RPLENWIHVG FEVLTDIFRL 120 HINGEIVSEQ PQSSSLDKNW NSNGLRKIAL VGSCADDGLQ GYVYHAEVLP LSLSIKDHYV 180 KDPPLWLSID LSSTSEIDED NDGIWNIVGG KASCRRIFSL DVVLLNAMSQ AINKELEIVA 240 SLVYADNGLP VEKTFDDEDP LLTSCDGVEF SNYDRPGKLL HGRASLKLKI SQLSSKCDNR 300 LFRVKLEIPK FIGYHFLEAF SHPIRCISRS RNPRTSLTWK RPTSVAEPFN KSQSFGLYNG 360 SIELQHNSIH EIRPSPSSKR IKLGQQKTST MEKPDVECNS DAWITTQVEN APRIPLDRGA 420 ENVEEADNSP SVSDSIEERL SDINITSSSS YSISDVTIFK YCLGGLTDRA LLLKEVATSA 480 SEEELFRLAD EVSLYSGCSH HRRQIVIAKR LIEEGTKVWN SISQNNRLIH WENVIFEIEE 540 QFMRITCSST RSLTEKVAFS SPSCTHCEHT RTPCCYLHVE DFELLRRIAG CREYMAQENF 600 EKIWRWLYPV AFTLASDPIN TIWNSTSPKW IEGFITKEEA ELSLQGLRGL QEPGTFVLRF 660 PTSRSWPHPD AGSLIVTYVG SDYSVHHRLL SLDYIYSCEE RGMNLKSLEH MLLAEPELSR 720 LGRQDICF

Sequence ? help Back to Top

Protein Sequence Length: 728 aa Download sequence Send to blast

MGSRNNNNNV INRKDYILLK DFRMEIEVEN EKDLSLSFWV YLIDSSTTTF PATIIKQVYP  60
DITSNAPFLV LNDKIITLFP LLHAHKETTN SSNSTSMEIK RPLENWIHVG FEVLTDIFRL  120
HINGEIVSEQ PQSSSLDKNW NSNGLRKIAL VGSCADDGLQ GYVYHAEVLP LSLSIKDHYV  180
KDPPLWLSID LSSTSEIDED NDGIWNIVGG KASCRRIFSL DVVLLNAMSQ AINKELEIVA  240
SLVYADNGLP VEKTFDDEDP LLTSCDGVEF SNYDRPGKLL HGRASLKLKI SQLSSKCDNR  300
LFRVKLEIPK FIGYHFLEAF SHPIRCISRS RNPRTSLTWK RPTSVAEPFN KSQSFGLYNG  360
SIELQHNSIH EIRPSPSSKR IKLGQQKTST MEKPDVECNS DAWITTQVEN APRIPLDRGA  420
ENVEEADNSP SVSDSIEERL SDINITSSSS YSISDVTIFK YCLGGLTDRA LLLKEVATSA  480
SEEELFRLAD EVSLYSGCSH HRRQIVIAKR LIEEGTKVWN SISQNNRLIH WENVIFEIEE  540
QFMRITCSST RSLTEKVAFS SPSCTHCEHT RTPCCYLHVE DFELLRRIAG CREYMAQENF  600
EKIWRWLYPV AFTLASDPIN TIWNSTSPKW IEGFITKEEA ELSLQGLRGL QEPGTFVLRF  660
PTSRSWPHPD AGSLIVTYVG SDYSVHHRLL SLDYIYSCEE RGMNLKSLEH MLLAEPELSR  720
LGRQDICF

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC208085	1e-138	AC208085.1 Populus trichocarpa clone JGIACSB05-D05, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011009095.1	0.0	PREDICTED: uncharacterized protein LOC105114285 isoform X2
TrEMBL	A0A2K1YI63	0.0	A0A2K1YI63_POPTR; Uncharacterized protein
STRING	POPTR_0011s10360.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF6710	30	36

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G78540.1	0.0	SH2 domain protein B