PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG022872.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family GATA
Protein Properties Length: 540aa    MW: 60226.4 Da    PI: 7.0362
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG022872.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA45.41.1e-14741135
         GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
                 C +Cg+t+TplWR+gp  ++ LCnaCG ++r kg+
  CCG022872.1  7 CCHCGVTSTPLWRNGPPEKPVLCNACGSRWRTKGT 41
                 99**************88888***********997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004013.4E-9155IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.47E-10545No hitNo description
CDDcd002026.86E-16654No hitNo description
PROSITE patternPS003440732IPR000679Zinc finger, GATA-type
PfamPF003202.1E-12741IPR000679Zinc finger, GATA-type
PROSITE profilePS5011411.2740IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.102.0E-11741IPR013088Zinc finger, NHR/GATA-type
PfamPF139193.0E-11282370IPR028020ASX homology domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 540 aa     Download sequence    Send to blast
MGKQGPCCHC GVTSTPLWRN GPPEKPVLCN ACGSRWRTKG TLANYTPLHA RAEPDDYEDH  60
RVSRLKSVSI SKNKEAKLLK RKPNYDNRVA LDYNQGYRKV VDEDTSNRSS SGSAISNPES  120
CAQFGSAEAS DLTGPAQSVV WDSLVPSRKR TCVNRPKPSS VEKLTKDLYT ILHEQQSSCF  180
SGSSEEDLLF DNETPMVSVE IGHGSVLIRH PSSIARDEES EASSLSVENK QYLTNEAYSH  240
PVILPVHNEN KSVNTTYPFT ETTKNLTGQG MQQEQLKRDK FPHEKVHILG SHNSPLCSID  300
LNDIINFEEF ARHLTNEEQQ QLLKYLPPLD TTKLPNSIES MFDSPQFKEN INSYQQLLSE  360
GVFDLSFSEA KTEDCKTLKR LTLSNLLKSK WVERYHLLKK CKNSNGKSFV GKGPNPDVVA  420
MSNIAGAKRS RDSPSQKFSE VKLMKSPKRV TMKATYENKE LIDNDGSCFS PRSLFALPPD  480
GSSLMLDSLH FVDESSDQDL LLDIPSNGSF AQAELFYPTN SFGQQASTSS SSIYPHLGRP
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1470260.0EF147026.1 Populus trichocarpa clone WS01226_G08 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011031967.10.0PREDICTED: GATA transcription factor 26-like
SwissprotQ8W4H11e-160GAT26_ARATH; GATA transcription factor 26
TrEMBLA9PFA90.0A9PFA9_POPTR; Uncharacterized protein
STRINGPOPTR_0003s08080.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF44243155
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17570.31e-164GATA transcription factor 26