PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG021691.2

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

Nin-like

Protein Properties

Length: 985aa MW: 108842 Da PI: 6.1035

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG021691.2	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	88.2	6.7e-28	577	628	1	52
RWP-RK 1 aekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 aek+isl +l++yF++++k+AAk Lgvc+T++KriCRq+GI+RWP+Rki+++ CCG021691.2 577 AEKTISLGVLQQYFAGSLKEAAKRLGVCPTTMKRICRQHGISRWPSRKINKV 628 589***********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	16.87	567	648	IPR003035	RWP-RK domain
Pfam	PF02042	5.8E-25	581	628	IPR003035	RWP-RK domain
SuperFamily	SSF54277	6.54E-22	885	973	No hit	No description
PROSITE profile	PS51745	25.119	889	971	IPR000270	PB1 domain
SMART	SM00666	4.7E-25	889	971	IPR000270	PB1 domain
Gene3D	G3DSA:3.10.20.240	2.4E-25	889	970	No hit	No description
Pfam	PF00564	1.1E-18	890	970	IPR000270	PB1 domain
CDD	cd06407	1.30E-33	890	970	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009414	Biological Process	response to water deprivation
GO:0010118	Biological Process	stomatal movement
GO:0010167	Biological Process	response to nitrate
GO:0042128	Biological Process	nitrate assimilation
GO:0005634	Cellular Component	nucleus
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 985 aa Download sequence Send to blast
MQKPIEGQGV GGGGEPEGMK SMELDLDLEN SWPLDQISFI SSNPMSPFLV STSTAHPCSP 60 LWAFSDAVDD RLAATASGNP NLITESQGEN DDNSKLPSPF LGLMPIDNPD GYCMIKERMT 120 QALRYFKEST EQHVLAQVWA PVKNGGQHVL TTSGQPFVLD PHSNGLHQYR MVSLMYMFSV 180 DGESDRELGL PGRVFKQKSP EWTPNVQYYS SKEYSRLDHA LRYNVRGTLA LPVFEPSGQS 240 CVGVLELVMN SQKINYAPEV DKVCKALEAV NLKSSEILDP PSIQTYTWHC FLNQICNEGR 300 QNALSEILEI LTMVCETHKL PLAQTWVPCM HRSVLTFGGG LKKSCTSFDG NCNGQVCMST 360 TDVAFYVVDA HMWGFREACL EHHLQKGQGV AGRAFLSQNS CFCPDITQFC KTEYPLVHYA 420 RMFGLTSCFA IFLRSSYTGD DDYILEFFLP PSITDSHEQK TFLGSILATM KQDFQSLKVA 480 SGMDLEEEGF VEMIEAATNG RLECIQIPQP TKSPPGDNIL PNEGHIEQIN SEKNKLMLDL 540 DVIKNGGSAV QADRRQTPSH PEKKETKKPT ERKRGKAEKT ISLGVLQQYF AGSLKEAAKR 600 LGVCPTTMKR ICRQHGISRW PSRKINKVNR SLSKLKWVIE SVQGTEGTFD LTPLTTSPLH 660 VADGTIPWAS NLNGSNQQNS PNSKPPEYHG NRNGSPTCRK PGSDGQAGFE DQLLGYRILS 720 QEKLTVQNRF SRELGRGSNR SKKRSGSRDG SAGTPTSHGS CQGSPENESA PVKDPSVSPV 780 HERCIKAGRS PELALQQTKE QNLSTAYSIP DALVATEAHE PFGGMLVEDA GSSKDLRNLC 840 PAVADPIVDE RVPESSWTDP SCFNMLPTQM FAAPWHAIPQ ATPRKEMKSV TIKATYREDV 900 IRFRISLTSG IVELREEVAK RLKLEVGTFD IKYLDDDQEW VLIACDADLL ECMDVSRSSS 960 SNIIRLSVHD ANANLGSSCE STGEL

Sequence ? help Back to Top

Protein Sequence Length: 985 aa Download sequence Send to blast

MQKPIEGQGV GGGGEPEGMK SMELDLDLEN SWPLDQISFI SSNPMSPFLV STSTAHPCSP  60
LWAFSDAVDD RLAATASGNP NLITESQGEN DDNSKLPSPF LGLMPIDNPD GYCMIKERMT  120
QALRYFKEST EQHVLAQVWA PVKNGGQHVL TTSGQPFVLD PHSNGLHQYR MVSLMYMFSV  180
DGESDRELGL PGRVFKQKSP EWTPNVQYYS SKEYSRLDHA LRYNVRGTLA LPVFEPSGQS  240
CVGVLELVMN SQKINYAPEV DKVCKALEAV NLKSSEILDP PSIQTYTWHC FLNQICNEGR  300
QNALSEILEI LTMVCETHKL PLAQTWVPCM HRSVLTFGGG LKKSCTSFDG NCNGQVCMST  360
TDVAFYVVDA HMWGFREACL EHHLQKGQGV AGRAFLSQNS CFCPDITQFC KTEYPLVHYA  420
RMFGLTSCFA IFLRSSYTGD DDYILEFFLP PSITDSHEQK TFLGSILATM KQDFQSLKVA  480
SGMDLEEEGF VEMIEAATNG RLECIQIPQP TKSPPGDNIL PNEGHIEQIN SEKNKLMLDL  540
DVIKNGGSAV QADRRQTPSH PEKKETKKPT ERKRGKAEKT ISLGVLQQYF AGSLKEAAKR  600
LGVCPTTMKR ICRQHGISRW PSRKINKVNR SLSKLKWVIE SVQGTEGTFD LTPLTTSPLH  660
VADGTIPWAS NLNGSNQQNS PNSKPPEYHG NRNGSPTCRK PGSDGQAGFE DQLLGYRILS  720
QEKLTVQNRF SRELGRGSNR SKKRSGSRDG SAGTPTSHGS CQGSPENESA PVKDPSVSPV  780
HERCIKAGRS PELALQQTKE QNLSTAYSIP DALVATEAHE PFGGMLVEDA GSSKDLRNLC  840
PAVADPIVDE RVPESSWTDP SCFNMLPTQM FAAPWHAIPQ ATPRKEMKSV TIKATYREDV  900
IRFRISLTSG IVELREEVAK RLKLEVGTFD IKYLDDDQEW VLIACDADLL ECMDVSRSSS  960
SNIIRLSVHD ANANLGSSCE STGEL

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in regulation of nitrate assimilation and in transduction of the nitrate signal. {ECO:0000269\|PubMed:18826430}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00449	DAP	Transfer from AT4G24020	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Not regulated by the N source or by nitrate. {ECO:0000269\|PubMed:18826430}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011022460.1	0.0	PREDICTED: protein NLP7-like isoform X1
Swissprot	Q84TH9	0.0	NLP7_ARATH; Protein NLP7
TrEMBL	A0A2K2B726	0.0	A0A2K2B726_POPTR; Uncharacterized protein
STRING	POPTR_0003s14300.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4257	34	56

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24020.1	0.0	NIN like protein 7

Publications ? help Back to Top
Xu N, et al. The Arabidopsis NRG2 Protein Mediates Nitrate Signaling and Interacts with and Regulates Key Nitrate Regulators. Plant Cell, 2016. 28(2): p. 485-504 [PMID:26744214] Karve R,Suárez-Román F,Iyer-Pascuzzi AS The Transcription Factor NIN-LIKE PROTEIN7 Controls Border-Like Cell Release. Plant Physiol., 2016. 171(3): p. 2101-11 [PMID:27221617] Yu LH, et al. Overexpression of Arabidopsis NLP7 improves plant growth under both nitrogen-limiting and -sufficient conditions by enhancing nitrogen and carbon assimilation. Sci Rep, 2016. 6: p. 27795 [PMID:27293103] Menz J,Li Z,Schulze WX,Ludewig U Early nitrogen-deprivation responses in Arabidopsis roots reveal distinct differences on transcriptome and (phospho-) proteome levels between nitrate and ammonium nutrition. Plant J., 2016. 88(5): p. 717-734 [PMID:27419465] Yan D, et al. NIN-like protein 8 is a master regulator of nitrate-promoted seed germination in Arabidopsis. Nat Commun, 2016. 7: p. 13179 [PMID:27731416] Guan P, et al. Interacting TCP and NLP transcription factors control plant responses to nitrate availability. Proc. Natl. Acad. Sci. U.S.A., 2017. 114(9): p. 2419-2424 [PMID:28202720] Liu KH, et al. Discovery of nitrate-CPK-NLP signalling in central nutrient-growth networks. Nature, 2017. 545(7654): p. 311-316 [PMID:28489820] Li Z, et al. The Arabidopsis CPSF30-L gene plays an essential role in nitrate signaling and regulates the nitrate transceptor gene NRT1.1. New Phytol., 2017. 216(4): p. 1205-1222 [PMID:28850721] Cao H, et al. Overexpression of the Maize ZmNLP6 and ZmNLP8 Can Complement the Arabidopsis Nitrate Regulatory Mutant nlp7 by Restoring Nitrate Signaling and Assimilation. Front Plant Sci, 2017. 8: p. 1703 [PMID:29051766] Konishi N,Okubo T,Yamaya T,Hayakawa T,Minamisawa K Nitrate Supply-Dependent Shifts in Communities of Root-Associated Bacteria in Arabidopsis. Microbes Environ., 2017. 32(4): p. 314-323 [PMID:29187692] Karve RA,Iyer-Pascuzzi AS Further insights into the role of NIN-LIKE PROTEIN 7 (NLP7) in root cap cell release. Plant Signal Behav, 2018. 13(1): p. e1414122 [PMID:29215953] Zhao L, et al. The Arabidopsis NLP7 gene regulates nitrate signaling via NRT1.1-dependent pathway in the presence of ammonium. Sci Rep, 2018. 8(1): p. 1487 [PMID:29367694]