PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG019765.2

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

HB-other

Protein Properties

Length: 574aa MW: 63014.4 Da PI: 6.6539

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG019765.2	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	37.4	4.2e-12	502	543	11	52
HHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHH CS Homeobox 11 qleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrR 52 ++ L ++F++n+yp++++++ LA++lg+t +qV WF N R CCG019765.2 502 VTQKLYSFFKENQYPDHAAKASLAEELGITFEQVNKWFMNAR 543 6899************************************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.9E-12	484	543	IPR009057	Homeodomain-like
SMART	SM00389	6.3E-10	487	553	IPR001356	Homeobox domain
SuperFamily	SSF46689	1.5E-11	497	546	IPR009057	Homeodomain-like
Pfam	PF00046	1.2E-9	502	543	IPR001356	Homeobox domain
CDD	cd00086	4.31E-11	503	543	No hit	No description
PROSITE profile	PS50071	11.596	506	549	IPR001356	Homeobox domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 574 aa Download sequence Send to blast
MSKAEHMGVS PSKVSHAKSY SCPAQTTLEN THEPSAEYKF GGYPEERHKL ECEIIQTEAG 60 DSSAAVLQSC SGEVVQPSTD DLTKSLLIDL DPPPDNARSD PFDNSPRPIS TAMDQKLEPS 120 ATSVNTACVR SESSKAIDSS ILLDEPRNSN TELSSCIANE TSQASLEDLA NDSRAEDAGL 180 SLIEASNSDL IDEGSYSQQT TSGQTREFPS DRACCKPLEE RQRPGSELAE NESMEIGTGL 240 SSGSAIENLE PLTELVTTSC PIKHIGMPPG KKYISSSRKS DRVLRSKSQE KPKAPESSNN 300 STNVNSTGEE KGKRRKKRRG KSIVVDEYSR IRARLRYLLN RMSYEQSLIT AYSGEGWKGL 360 SKLLSMLEPD SHQEKSAPFS GKRNIERLDY KKLYDETYGN ISTSSDDDYT DTVAPRKRRK 420 NTGDVAMGIA NGDASVTENG MNSRKMNQEL KKNEHSSGRT RQNSSFQDTN VSPAKTHGGK 480 SLSGSSTKRF RPSAYKKLGE AVTQKLYSFF KENQYPDHAA KASLAEELGI TFEQVNKWFM 540 NARWSFNHSS PEGTSKSESA SGKGSCEGHV RHSE

Sequence ? help Back to Top

Protein Sequence Length: 574 aa Download sequence Send to blast

MSKAEHMGVS PSKVSHAKSY SCPAQTTLEN THEPSAEYKF GGYPEERHKL ECEIIQTEAG  60
DSSAAVLQSC SGEVVQPSTD DLTKSLLIDL DPPPDNARSD PFDNSPRPIS TAMDQKLEPS  120
ATSVNTACVR SESSKAIDSS ILLDEPRNSN TELSSCIANE TSQASLEDLA NDSRAEDAGL  180
SLIEASNSDL IDEGSYSQQT TSGQTREFPS DRACCKPLEE RQRPGSELAE NESMEIGTGL  240
SSGSAIENLE PLTELVTTSC PIKHIGMPPG KKYISSSRKS DRVLRSKSQE KPKAPESSNN  300
STNVNSTGEE KGKRRKKRRG KSIVVDEYSR IRARLRYLLN RMSYEQSLIT AYSGEGWKGL  360
SKLLSMLEPD SHQEKSAPFS GKRNIERLDY KKLYDETYGN ISTSSDDDYT DTVAPRKRRK  420
NTGDVAMGIA NGDASVTENG MNSRKMNQEL KKNEHSSGRT RQNSSFQDTN VSPAKTHGGK  480
SLSGSSTKRF RPSAYKKLGE AVTQKLYSFF KENQYPDHAA KASLAEELGI TFEQVNKWFM  540
NARWSFNHSS PEGTSKSESA SGKGSCEGHV RHSE

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	312	318	KRRKKRR
2	315	320	KKRRGK

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011030428.1	0.0	PREDICTED: uncharacterized protein LOC105129883
TrEMBL	A0A2K2C5U3	0.0	A0A2K2C5U3_POPTR; Uncharacterized protein
STRING	POPTR_0001s30570.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF8437	31	41

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19510.1	2e-19	Homeodomain-like protein with RING/FYVE/PHD-type zinc finger domain