PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG016791.3

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

HB-other

Protein Properties

Length: 1693aa MW: 190310 Da PI: 5.5347

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG016791.3	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	54.6	1.8e-17	28	83	2	57
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 kR+ t+ ql++Le++++ + yps e+r+e+++ lgL++rq ++WF+ rR k++k CCG016791.3 28 PKRQMKTPFQLQTLENAYATDAYPSDETRAEMSEILGLSDRQLQMWFCHRRLKDRK 83 69****************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	3.1E-17	7	84	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.75E-16	16	85	IPR009057	Homeodomain-like
PROSITE profile	PS50071	16.503	24	84	IPR001356	Homeobox domain
SMART	SM00389	2.4E-18	26	88	IPR001356	Homeobox domain
Pfam	PF00046	5.3E-15	28	83	IPR001356	Homeobox domain
CDD	cd00086	2.23E-14	29	85	No hit	No description
SMART	SM00571	1.5E-21	515	574	IPR018501	DDT domain
PROSITE profile	PS50827	16.627	515	574	IPR018501	DDT domain
Pfam	PF02791	5.1E-17	516	571	IPR018501	DDT domain
Pfam	PF05066	4.4E-15	697	765	IPR007759	HB1/Asxl, restriction endonuclease HTH domain
Pfam	PF15612	1.7E-6	905	949	IPR028942	WHIM1 domain
Pfam	PF15613	6.5E-13	1088	1160	IPR028941	WHIM2 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1693 aa Download sequence Send to blast
MEEANSEGEN HSKSKSNAMN SNEGQSKPKR QMKTPFQLQT LENAYATDAY PSDETRAEMS 60 EILGLSDRQL QMWFCHRRLK DRKENLVKHR KAAPLSESPL EDTRIVRADS GSDYGSGSVS 120 GSSPLSESRK VVLNDGHKMR RHYESSPRSV MELRAIACVE AQLGEPLRED GPILGMEFDP 180 LPPDAFGEPI AAITEQPKRM GYSYEDKVYE RRDAQSSKDP ASIRSDTYGP HIQSPYHDSP 240 VDTLRGRASP FGVGQIPRAR LLSQQEKRGH VFSSPQRDGD YLLQQDTFTK NRTSAQSISH 300 PIIGLENPNV FSDAQTFHND TELQLERKHK IDEPRTAREV EAYEIRIRKE LEKQDILRRK 360 NEERMKKEME RLDRERRKEE ERLIREKQRE EERSLREQKR ELERREKFMQ KEYLRAEKMR 420 QKEELRREKE AVKRKAAMEK ATARKIAKDS LDLIEDEQLE LMELIAASKG LASIVNLNYD 480 TLQNLDSFRD LLITFPSEAV QLKKSFGFQP WLDAEENIGN LLMVWKFFIA FADVLGLWPF 540 TLDEFVQAFH DYDSRLLGEL HVALLKLIIK DIEDVARTPS SGLGINQYYT ANPEGGHPQI 600 VQGAHTWGFD IRNWQQHLNS LTWPEILRQL ALSAGFGPRL KKKCATWAGL GDIDEVKDCE 660 DIVSIIRSGS AAENAFALMR EKGLLLPRRS RHRLTPGTVK FAAFHVLSLE GSKGLTVLEL 720 ADRIQKSGLR DLTTSKTPEA SISVALTRDQ KLFERIAPST YCVRAAFRKD PADAEAILAE 780 ARKKIRIFEN GFLGGEDADD VERDEDSEGD VDEDPEVDDL ATPMSSNKSA VHSSKVNALS 840 GSGSGKDSND ASLTVQNKCE KGLSSFSLNG PKDAVAPSII EHSVTHKDEG PNKADEENIE 900 IDEKNSGESW IQGLTEGEYS HLSVEERLRA LVVLVGISNE GNSIRAVLED RLEAANVLKK 960 QMWAEAQSDR SRLKEEFISK LDFPSFTGIK VETQVTSSAV EGSQSPLVLV DGKNKEASPN 1020 NVEDQKPLPE DAENHVSCAL SEKALVIQDL SMNPDNISAQ QHGYASKRSR SQLKAYIAHL 1080 AEEMHIYRSL PLGQDRRRNR YWQFVASASR NDPCSGRIFV ELHDGNWRVI DSEEAFDTFL 1140 SSLDTRGVRE SHLCIMLQKI ESSFKENVQR NLGSANIVCQ SGTTDEKETA ETDTADGPAD 1200 DSPSSMVCAS SSDTSDAFSL FSIELGRNSA ERKGALKRCE QLLDTCDQCL DTYLSEDSHC 1260 LSCHRTFKFE NKKFDFAEHE IQCKKKRKID PGNACTCDSS LPPGTRLLTA LLSCIEVSVP 1320 QEALESFWMG IPRKDWGMKL AMPSSTEEFL QILTVFESAI KRERLSSNFE MTKELLGSSA 1380 LSGSAAHDSA SLGLVPVLPW MPKTTAAVAL RLFELDASII YVKNEKPKPS ADKPVKLYMK 1440 LSSRYSPFKN EDVELKDTKQ EEHITDDIVD PRGKQSSYKR GRGRRDQGLA TKWQRRMPGL 1500 KSDTGRKSSS RGTNNLNQGL RQQGKKTNLQ ATSRGRRTVR KRRVEKMQPK EPMLGRMTDK 1560 VASTSHLSKK SAVHNKYDKS FRNIGDEDWS VKKGRMNGDD NSNIMEEAES DDNVEEVYGQ 1620 GNWEPGFKGI SNGWNRNPME VSDDDANGSN GIEAMGDDDS EGDMEMSDGS DRAANQVQSD 1680 EGMDSADSDE YSD

Sequence ? help Back to Top

Protein Sequence Length: 1693 aa Download sequence Send to blast

MEEANSEGEN HSKSKSNAMN SNEGQSKPKR QMKTPFQLQT LENAYATDAY PSDETRAEMS  60
EILGLSDRQL QMWFCHRRLK DRKENLVKHR KAAPLSESPL EDTRIVRADS GSDYGSGSVS  120
GSSPLSESRK VVLNDGHKMR RHYESSPRSV MELRAIACVE AQLGEPLRED GPILGMEFDP  180
LPPDAFGEPI AAITEQPKRM GYSYEDKVYE RRDAQSSKDP ASIRSDTYGP HIQSPYHDSP  240
VDTLRGRASP FGVGQIPRAR LLSQQEKRGH VFSSPQRDGD YLLQQDTFTK NRTSAQSISH  300
PIIGLENPNV FSDAQTFHND TELQLERKHK IDEPRTAREV EAYEIRIRKE LEKQDILRRK  360
NEERMKKEME RLDRERRKEE ERLIREKQRE EERSLREQKR ELERREKFMQ KEYLRAEKMR  420
QKEELRREKE AVKRKAAMEK ATARKIAKDS LDLIEDEQLE LMELIAASKG LASIVNLNYD  480
TLQNLDSFRD LLITFPSEAV QLKKSFGFQP WLDAEENIGN LLMVWKFFIA FADVLGLWPF  540
TLDEFVQAFH DYDSRLLGEL HVALLKLIIK DIEDVARTPS SGLGINQYYT ANPEGGHPQI  600
VQGAHTWGFD IRNWQQHLNS LTWPEILRQL ALSAGFGPRL KKKCATWAGL GDIDEVKDCE  660
DIVSIIRSGS AAENAFALMR EKGLLLPRRS RHRLTPGTVK FAAFHVLSLE GSKGLTVLEL  720
ADRIQKSGLR DLTTSKTPEA SISVALTRDQ KLFERIAPST YCVRAAFRKD PADAEAILAE  780
ARKKIRIFEN GFLGGEDADD VERDEDSEGD VDEDPEVDDL ATPMSSNKSA VHSSKVNALS  840
GSGSGKDSND ASLTVQNKCE KGLSSFSLNG PKDAVAPSII EHSVTHKDEG PNKADEENIE  900
IDEKNSGESW IQGLTEGEYS HLSVEERLRA LVVLVGISNE GNSIRAVLED RLEAANVLKK  960
QMWAEAQSDR SRLKEEFISK LDFPSFTGIK VETQVTSSAV EGSQSPLVLV DGKNKEASPN  1020
NVEDQKPLPE DAENHVSCAL SEKALVIQDL SMNPDNISAQ QHGYASKRSR SQLKAYIAHL  1080
AEEMHIYRSL PLGQDRRRNR YWQFVASASR NDPCSGRIFV ELHDGNWRVI DSEEAFDTFL  1140
SSLDTRGVRE SHLCIMLQKI ESSFKENVQR NLGSANIVCQ SGTTDEKETA ETDTADGPAD  1200
DSPSSMVCAS SSDTSDAFSL FSIELGRNSA ERKGALKRCE QLLDTCDQCL DTYLSEDSHC  1260
LSCHRTFKFE NKKFDFAEHE IQCKKKRKID PGNACTCDSS LPPGTRLLTA LLSCIEVSVP  1320
QEALESFWMG IPRKDWGMKL AMPSSTEEFL QILTVFESAI KRERLSSNFE MTKELLGSSA  1380
LSGSAAHDSA SLGLVPVLPW MPKTTAAVAL RLFELDASII YVKNEKPKPS ADKPVKLYMK  1440
LSSRYSPFKN EDVELKDTKQ EEHITDDIVD PRGKQSSYKR GRGRRDQGLA TKWQRRMPGL  1500
KSDTGRKSSS RGTNNLNQGL RQQGKKTNLQ ATSRGRRTVR KRRVEKMQPK EPMLGRMTDK  1560
VASTSHLSKK SAVHNKYDKS FRNIGDEDWS VKKGRMNGDD NSNIMEEAES DDNVEEVYGQ  1620
GNWEPGFKGI SNGWNRNPME VSDDDANGSN GIEAMGDDDS EGDMEMSDGS DRAANQVQSD  1680
EGMDSADSDE YSD

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	76	83	RRLKDRKE

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator required for the maintenance of the plant vegetative phase. In association with CHR11 or CHR17 may prevent the early activation of the vegetative-to-reproductive transition by regulating key genes that contribute to flower timing, such as FT, SEP1, SEP3, AGL8/FUL, SOC1 and FLC. {ECO:0000269\|PubMed:22694359}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011001229.1	0.0	PREDICTED: uncharacterized protein LOC105108578 isoform X2
Swissprot	F4HY56	0.0	RLT1_ARATH; Homeobox-DDT domain protein RLT1
TrEMBL	A0A2K1YG45	0.0	A0A2K1YG45_POPTR; Uncharacterized protein
STRING	POPTR_0011s05660.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2523	33	69

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G28420.1	0.0	homeobox-1