PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG016791.3
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family HB-other
Protein Properties Length: 1693aa    MW: 190310 Da    PI: 5.5347
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG016791.3genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox54.61.8e-172883257
                 T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
     Homeobox  2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57
                  kR+  t+ ql++Le++++ + yps e+r+e+++ lgL++rq ++WF+ rR k++k
  CCG016791.3 28 PKRQMKTPFQLQTLENAYATDAYPSDETRAEMSEILGLSDRQLQMWFCHRRLKDRK 83
                 69****************************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.1E-17784IPR009057Homeodomain-like
SuperFamilySSF466891.75E-161685IPR009057Homeodomain-like
PROSITE profilePS5007116.5032484IPR001356Homeobox domain
SMARTSM003892.4E-182688IPR001356Homeobox domain
PfamPF000465.3E-152883IPR001356Homeobox domain
CDDcd000862.23E-142985No hitNo description
SMARTSM005711.5E-21515574IPR018501DDT domain
PROSITE profilePS5082716.627515574IPR018501DDT domain
PfamPF027915.1E-17516571IPR018501DDT domain
PfamPF050664.4E-15697765IPR007759HB1/Asxl, restriction endonuclease HTH domain
PfamPF156121.7E-6905949IPR028942WHIM1 domain
PfamPF156136.5E-1310881160IPR028941WHIM2 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1693 aa     Download sequence    Send to blast
MEEANSEGEN HSKSKSNAMN SNEGQSKPKR QMKTPFQLQT LENAYATDAY PSDETRAEMS  60
EILGLSDRQL QMWFCHRRLK DRKENLVKHR KAAPLSESPL EDTRIVRADS GSDYGSGSVS  120
GSSPLSESRK VVLNDGHKMR RHYESSPRSV MELRAIACVE AQLGEPLRED GPILGMEFDP  180
LPPDAFGEPI AAITEQPKRM GYSYEDKVYE RRDAQSSKDP ASIRSDTYGP HIQSPYHDSP  240
VDTLRGRASP FGVGQIPRAR LLSQQEKRGH VFSSPQRDGD YLLQQDTFTK NRTSAQSISH  300
PIIGLENPNV FSDAQTFHND TELQLERKHK IDEPRTAREV EAYEIRIRKE LEKQDILRRK  360
NEERMKKEME RLDRERRKEE ERLIREKQRE EERSLREQKR ELERREKFMQ KEYLRAEKMR  420
QKEELRREKE AVKRKAAMEK ATARKIAKDS LDLIEDEQLE LMELIAASKG LASIVNLNYD  480
TLQNLDSFRD LLITFPSEAV QLKKSFGFQP WLDAEENIGN LLMVWKFFIA FADVLGLWPF  540
TLDEFVQAFH DYDSRLLGEL HVALLKLIIK DIEDVARTPS SGLGINQYYT ANPEGGHPQI  600
VQGAHTWGFD IRNWQQHLNS LTWPEILRQL ALSAGFGPRL KKKCATWAGL GDIDEVKDCE  660
DIVSIIRSGS AAENAFALMR EKGLLLPRRS RHRLTPGTVK FAAFHVLSLE GSKGLTVLEL  720
ADRIQKSGLR DLTTSKTPEA SISVALTRDQ KLFERIAPST YCVRAAFRKD PADAEAILAE  780
ARKKIRIFEN GFLGGEDADD VERDEDSEGD VDEDPEVDDL ATPMSSNKSA VHSSKVNALS  840
GSGSGKDSND ASLTVQNKCE KGLSSFSLNG PKDAVAPSII EHSVTHKDEG PNKADEENIE  900
IDEKNSGESW IQGLTEGEYS HLSVEERLRA LVVLVGISNE GNSIRAVLED RLEAANVLKK  960
QMWAEAQSDR SRLKEEFISK LDFPSFTGIK VETQVTSSAV EGSQSPLVLV DGKNKEASPN  1020
NVEDQKPLPE DAENHVSCAL SEKALVIQDL SMNPDNISAQ QHGYASKRSR SQLKAYIAHL  1080
AEEMHIYRSL PLGQDRRRNR YWQFVASASR NDPCSGRIFV ELHDGNWRVI DSEEAFDTFL  1140
SSLDTRGVRE SHLCIMLQKI ESSFKENVQR NLGSANIVCQ SGTTDEKETA ETDTADGPAD  1200
DSPSSMVCAS SSDTSDAFSL FSIELGRNSA ERKGALKRCE QLLDTCDQCL DTYLSEDSHC  1260
LSCHRTFKFE NKKFDFAEHE IQCKKKRKID PGNACTCDSS LPPGTRLLTA LLSCIEVSVP  1320
QEALESFWMG IPRKDWGMKL AMPSSTEEFL QILTVFESAI KRERLSSNFE MTKELLGSSA  1380
LSGSAAHDSA SLGLVPVLPW MPKTTAAVAL RLFELDASII YVKNEKPKPS ADKPVKLYMK  1440
LSSRYSPFKN EDVELKDTKQ EEHITDDIVD PRGKQSSYKR GRGRRDQGLA TKWQRRMPGL  1500
KSDTGRKSSS RGTNNLNQGL RQQGKKTNLQ ATSRGRRTVR KRRVEKMQPK EPMLGRMTDK  1560
VASTSHLSKK SAVHNKYDKS FRNIGDEDWS VKKGRMNGDD NSNIMEEAES DDNVEEVYGQ  1620
GNWEPGFKGI SNGWNRNPME VSDDDANGSN GIEAMGDDDS EGDMEMSDGS DRAANQVQSD  1680
EGMDSADSDE YSD
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17683RRLKDRKE
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator required for the maintenance of the plant vegetative phase. In association with CHR11 or CHR17 may prevent the early activation of the vegetative-to-reproductive transition by regulating key genes that contribute to flower timing, such as FT, SEP1, SEP3, AGL8/FUL, SOC1 and FLC. {ECO:0000269|PubMed:22694359}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011001229.10.0PREDICTED: uncharacterized protein LOC105108578 isoform X2
SwissprotF4HY560.0RLT1_ARATH; Homeobox-DDT domain protein RLT1
TrEMBLA0A2K1YG450.0A0A2K1YG45_POPTR; Uncharacterized protein
STRINGPOPTR_0011s05660.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF25233369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28420.10.0homeobox-1