PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG010488.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family GATA
Protein Properties Length: 214aa    MW: 23261.5 Da    PI: 5.4712
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG010488.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA49.36.7e-16164193130
         GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyy 30 
                  C++C + kTp+WR gp g+ktLCnaCG+ +
  CCG010488.1 164 CTHCASEKTPQWRTGPLGPKTLCNACGVSF 193
                  ***************************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF577167.6E-12157196No hitNo description
SMARTSM004012.7E-10158209IPR000679Zinc finger, GATA-type
PROSITE profilePS5011410.739158191IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.101.2E-12162200IPR013088Zinc finger, NHR/GATA-type
CDDcd002029.58E-11163190No hitNo description
PROSITE patternPS003440164189IPR000679Zinc finger, GATA-type
PfamPF003201.1E-13164193IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 214 aa     Download sequence    Send to blast
MDVYGGLSTT TAPDYFHIDD LLDFSNDDLL SSPSSSIDHH HLPPPETPSI HHHHFPSSTY  60
INNPSSLSTD FTDHLSVPTD DVAELEWLSQ FVEDSFSDFP SIINIPTDTS LCNKPRSKRS  120
RATTTTATSS SPELETAVTG KSRLKKENNG APHSTAEEGT VRRCTHCASE KTPQWRTGPL  180
GPKTLCNACG VSFGAPKTER DDGEAAATAR LPRL
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes. {ECO:0000269|PubMed:12139008}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011033283.11e-139PREDICTED: GATA transcription factor 2-like
SwissprotO497418e-46GATA2_ARATH; GATA transcription factor 2
TrEMBLU5FUV21e-117U5FUV2_POPTR; GATA transcription factor
STRINGPOPTR_0014s05760.11e-118(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF135501925
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45050.15e-34GATA transcription factor 2
Publications ? help Back to Top
  1. Jiang K,Yung V,Chiba T,Feldman LJ
    Longitudinal patterning in roots: a GATA2-auxin interaction underlies and maintains the root transition domain.
    Planta, 2018. 247(4): p. 831-843
    [PMID:29249045]