PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG009450.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

TALE

Protein Properties

Length: 585aa MW: 64472.1 Da PI: 7.1708

Description

TALE family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG009450.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	25.9	1.7e-08	504	542	18	54
HHHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 18 lFek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 +F++ ++yp+ +e+ LA k gLt +qV++WF N R + CCG009450.1 504 MFQNflHPYPKDAEKHLLAVKSGLTRSQVSNWFINARVR 542 5887779******************************88 PP
2	BELL	76.8	3.3e-25	376	445	2	72
BELL 2 rqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 +++l++k+++Ll+ll+ Vd+rY+q+ ++++tvis+F+a+++l++ +++t++Al++iS+ + L+d+i +qi CCG009450.1 376 KRALEAKRTQLLTLLQVVDERYSQCLDEIHTVISAFHAATELDP-QIHTRFALQTISFLCKRLRDRIGNQI 445 6899**************************************.********************9998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00574	1.4E-23	293	443	IPR006563	POX domain
Pfam	PF07526	2.4E-26	298	441	IPR006563	POX domain
SMART	SM00389	2.2E-5	486	550	IPR001356	Homeobox domain
CDD	cd00086	6.80E-11	486	546	No hit	No description
SuperFamily	SSF46689	5.99E-15	488	554	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	6.5E-25	489	552	IPR009057	Homeodomain-like
Pfam	PF05920	9.4E-15	503	542	IPR008422	Homeobox KN domain
PROSITE profile	PS50071	10.851	505	546	IPR001356	Homeobox domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 585 aa Download sequence Send to blast
MAGRNSVATD RSSQRTPNSL AQFDSFNLNN HSQTVVGFTM LPTLQGEPIN DLHSNIHLAN 60 RSSVLNSEAL VTSLGRNVVG DTLPGCSRSI SNTPFDEQFG GGTTISSSSL ATLLATRSGL 120 QENPNNLAIS GPSSYPLEVS RSFVSNDCTN ALNSSFASSL NYGCGEVFGS TNGKEDFDRF 180 PAPVEPGGRA SVRAGFQPYS SSGSLQLNSW VEPNGVNVSA GDPFASGKPT NELSLSLSTS 240 QPSVIDRSIP DQCLEISCNH LTRHCLKETR SCSEQTSSSS KELSLSCNSY KAGQFSQVLV 300 GSRYLHVIQE ILAKIASYSL ENVDQISSST VWFKTGASTP FFSSYPTEGG MVSMGSDESP 360 GVNGRFEVQM DPALQKRALE AKRTQLLTLL QVVDERYSQC LDEIHTVISA FHAATELDPQ 420 IHTRFALQTI SFLCKRLRDR IGNQILAMGA QLDSGDTIEI EGSFESSYLQ KRWTLQQLKK 480 KDHPLWRPQR GLPERSVSVL RAWMFQNFLH PYPKDAEKHL LAVKSGLTRS QVSNWFINAR 540 VRLWKPLIEE MYAEMNRRKV HQMEEGTYSN HKDQSSISNP RFNVN

Sequence ? help Back to Top

Protein Sequence Length: 585 aa Download sequence Send to blast

MAGRNSVATD RSSQRTPNSL AQFDSFNLNN HSQTVVGFTM LPTLQGEPIN DLHSNIHLAN  60
RSSVLNSEAL VTSLGRNVVG DTLPGCSRSI SNTPFDEQFG GGTTISSSSL ATLLATRSGL  120
QENPNNLAIS GPSSYPLEVS RSFVSNDCTN ALNSSFASSL NYGCGEVFGS TNGKEDFDRF  180
PAPVEPGGRA SVRAGFQPYS SSGSLQLNSW VEPNGVNVSA GDPFASGKPT NELSLSLSTS  240
QPSVIDRSIP DQCLEISCNH LTRHCLKETR SCSEQTSSSS KELSLSCNSY KAGQFSQVLV  300
GSRYLHVIQE ILAKIASYSL ENVDQISSST VWFKTGASTP FFSSYPTEGG MVSMGSDESP  360
GVNGRFEVQM DPALQKRALE AKRTQLLTLL QVVDERYSQC LDEIHTVISA FHAATELDPQ  420
IHTRFALQTI SFLCKRLRDR IGNQILAMGA QLDSGDTIEI EGSFESSYLQ KRWTLQQLKK  480
KDHPLWRPQR GLPERSVSVL RAWMFQNFLH PYPKDAEKHL LAVKSGLTRS QVSNWFINAR  540
VRLWKPLIEE MYAEMNRRKV HQMEEGTYSN HKDQSSISNP RFNVN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4xrm_A	3e-14	492	550	5	63	Homeobox protein Meis2
4xrm_B	3e-14	492	550	5	63	Homeobox protein Meis2
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor which may be involved in the signal transduction pathway downstream of the COP1 gene. Controls floral competency as a specific activator of FLC expression. Is responsive of the nuclear import of SHOOT MERISTEMLESS (STM). {ECO:0000269\|PubMed:17908157}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By light. In etiolated seedlings, maximally expressed after 3 days of illumination.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AF375967	1e-59	AF375967.1 Lycopersicon esculentum bell-like homeodomain protein 4 (BL4) mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011019486.1	0.0	PREDICTED: homeobox protein ATH1-like
Refseq	XP_011019487.1	0.0	PREDICTED: homeobox protein ATH1-like
Refseq	XP_011019488.1	0.0	PREDICTED: homeobox protein ATH1-like
Refseq	XP_011019489.1	0.0	PREDICTED: homeobox protein ATH1-like
Refseq	XP_011019490.1	0.0	PREDICTED: homeobox protein ATH1-like
Refseq	XP_011019491.1	0.0	PREDICTED: homeobox protein ATH1-like
Swissprot	P48731	1e-112	ATH1_ARATH; Homeobox protein ATH1
TrEMBL	A0A2K2A6V1	0.0	A0A2K2A6V1_POPTR; Uncharacterized protein
STRING	POPTR_0006s24680.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5939	32	49

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G32980.1	1e-108	homeobox gene 1

Publications ? help Back to Top
Khan M, et al. Repression of Lateral Organ Boundary Genes by PENNYWISE and POUND-FOOLISH Is Essential for Meristem Maintenance and Flowering in Arabidopsis. Plant Physiol., 2015. 169(3): p. 2166-86 [PMID:26417006]