PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG009070.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family STAT
Protein Properties Length: 738aa    MW: 83786 Da    PI: 6.1377
Description STAT family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG009070.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1STAT198.37.2e-622413581118
         STAT   1 ldvvllnalgqpvekdvevvasLlyadsglvveksddaeapLLisydGvefssedrplkllrGrasfklkisqLsskcdnrLfrikfeipklkkypfl 98 
                  ldvvllna+ q+v+k++e+vasL+yadsgl+vek++d+e+pLL+s+dG+ef+s+drp kll+G+as+klkisqLsskcdnrLfrik+eipkl+ y+fl
  CCG009070.1 241 LDVVLLNAICQAVNKELEIVASLVYADSGLPVEKTSDDEDPLLASCDGIEFASYDRPGKLLHGHASLKLKISQLSSKCDNRLFRIKLEIPKLSGYHFL 338
                  8************************************************************************************************* PP

         STAT  99 eavskpirCisrsrntrsss 118
                  ea+s+pirCisrsrn r+s 
  CCG009070.1 339 EAFSHPIRCISRSRNPRTSL 358
                  ***************99764 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.60.120.2005.4E-711142IPR013320Concanavalin A-like lectin/glucanase domain
SuperFamilySSF498993.17E-613160IPR013320Concanavalin A-like lectin/glucanase domain
Gene3DG3DSA:3.30.505.101.8E-6596682IPR000980SH2 domain
SuperFamilySSF555505.51E-8597672IPR000980SH2 domain
PROSITE profilePS500019.322603685IPR000980SH2 domain
Sequence ? help Back to Top
Protein Sequence    Length: 738 aa     Download sequence    Send to blast
MGSDNNNVIN RKDYILLKDF RKEIEIENEK DFSISFWVYL INSSTTAFPA TIIKQVCSDI  60
SSDAPFLVLN EKKIMTLFPF LHAHKETTNF SNSTSMEIEF PLENWIHVGC EVVTNMLRFH  120
INGKIVGEQP QSFSLDKSSN SNGPRKITLA GAAGDHGLLG YVHHAEVLPL SMSIKDHYVK  180
DPPVRLSIDL SSTSEIDEDS DRIWNIVGGK VSACDDFHLL EEEKDGVKFQ RLASCRRIFS  240
LDVVLLNAIC QAVNKELEIV ASLVYADSGL PVEKTSDDED PLLASCDGIE FASYDRPGKL  300
LHGHASLKLK ISQLSSKCDN RLFRIKLEIP KLSGYHFLEA FSHPIRCISR SRNPRTSLTW  360
KRPTSAADPF NKYQSFDLCN RSLELQQNSI HKIRPSPSSK RIKLGQERTS TMGQPDVACY  420
FDTWTTNQVA NAVGTQLARG AENIEEADNS PSGSPAEYCL GGLTDRALLL KEVATSASEE  480
ELFRLANEVS LYSGCSHHRR QIVISKRLIE DGTKVWNSIS QNNRHIQWEN VIFEIEEQFM  540
RITCSSTRSL TEQDFELLRR ISGCGEYMAQ ENFEKIWRWL YPVAFTLTSD SINTIWNSTS  600
PKWIEGFITK EEAELSLQGP RGLQEPGTFV LRFPTSRSWP HPDAGCLIVT YVGSDYTVHH  660
RLLSLDYIYS CEESEMNGKS LEDMLFAEPE LSRLGRQDIL FLIYFFIFLF FYGGDTKQCL  720
FSRWRGRHLI ASHGLIIR
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2080850.0AC208085.1 Populus trichocarpa clone JGIACSB05-D05, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011045568.10.0PREDICTED: uncharacterized protein LOC105140432 isoform X1
RefseqXP_011045569.10.0PREDICTED: uncharacterized protein LOC105140432 isoform X2
SwissprotQ56XZ10.0SHB_ARATH; SH2 domain-containing protein B
TrEMBLA0A2K2CAA60.0A0A2K2CAA6_POPTR; Uncharacterized protein
STRINGPOPTR_0011s10360.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF67103036
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78540.10.0SH2 domain protein B
Publications ? help Back to Top
  1. Yamada Y,Wang HY,Fukuzawa M,Barton GJ,Williams JG
    A new family of transcription factors.
    Development, 2008. 135(18): p. 3093-101
    [PMID:18701541]