PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG007422.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family ERF
Protein Properties Length: 300aa    MW: 32423.3 Da    PI: 10.4577
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG007422.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.68.8e-20141190356
          AP2   3 ykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                  y+GVr ++ +grW AeIrd       r r++lg+f+taeeAa+a++ a+++l+g+
  CCG007422.1 141 YRGVRKRP-WGRWSAEIRDrI----GRCRHWLGTFDTAEEAARAYDSAARRLRGA 190
                  9*******.**********32....25**************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003802.8E-31140203IPR001471AP2/ERF domain
PROSITE profilePS5103222.642140197IPR001471AP2/ERF domain
SuperFamilySSF541712.22E-21140197IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.8E-29140197IPR001471AP2/ERF domain
PfamPF008471.1E-13141189IPR001471AP2/ERF domain
PRINTSPR003671.3E-10141152IPR001471AP2/ERF domain
CDDcd000181.37E-31141198No hitNo description
PRINTSPR003671.3E-10163179IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    Send to blast
MNHQKLIPVP FFPQPETYQM FRLLTENPSF RGSFLEPQNS FSSPFTFDHY NPTNYPPVSP  60
DISASVSLSD SFKKSPDTPP ILDGIGAIVG QQVLFGTNDS RNSEVSCLSS ISQRTGSKTS  120
KQESGAVRSS ISNGVPIRKT YRGVRKRPWG RWSAEIRDRI GRCRHWLGTF DTAEEAARAY  180
DSAARRLRGA KARTNFEIPP VLPPVSSSSS SPPSACSVSI SNNTEARKRT NVNNHSSKMV  240
GNGGRKCAVV TSVAHLFSDF EGKGTSASGN VELDLKLGMG SDGHRGGNKS AASAPPSMVI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A7e-17139198161ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
5wx9_A2e-161411961571Ethylene-responsive transcription factor ERF096
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011041864.10.0PREDICTED: ethylene-responsive transcription factor ERF084
TrEMBLA0A2K1X3K40.0A0A2K1X3K4_POPTR; Uncharacterized protein
STRINGPOPTR_0017s08090.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF130232631
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G80580.13e-23ERF family protein