PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG006198.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

HB-other

Protein Properties

Length: 1739aa MW: 196850 Da PI: 5.7292

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG006198.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	60.9	2e-19	27	82	2	57
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 kR+ t+ qle+Le++++ + yps+e+r+eL++klgL++rq ++WF+ rR k+kk CCG006198.1 27 PKRQMKTPFQLETLEKAYATETYPSEEMRAELSEKLGLSDRQLQMWFCHRRLKDKK 82 69****************************************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	5.5E-19	5	83	IPR009057	Homeodomain-like
SuperFamily	SSF46689	3.98E-17	16	83	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.248	23	83	IPR001356	Homeobox domain
SMART	SM00389	3.0E-19	25	87	IPR001356	Homeobox domain
Pfam	PF00046	4.8E-17	27	82	IPR001356	Homeobox domain
CDD	cd00086	1.41E-14	28	83	No hit	No description
SMART	SM00571	5.4E-22	512	571	IPR018501	DDT domain
PROSITE profile	PS50827	16.697	512	571	IPR018501	DDT domain
Pfam	PF02791	3.5E-17	513	568	IPR018501	DDT domain
Pfam	PF05066	1.8E-15	696	764	IPR007759	HB1/Asxl, restriction endonuclease HTH domain
Pfam	PF15612	2.5E-7	904	948	IPR028942	WHIM1 domain
Pfam	PF15613	2.1E-13	1087	1159	IPR028941	WHIM2 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0010228	Biological Process	vegetative to reproductive phase transition of meristem
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1739 aa Download sequence Send to blast
MDANSDEEQH NRSKNNVVSS NEGQSKPKRQ MKTPFQLETL EKAYATETYP SEEMRAELSE 60 KLGLSDRQLQ MWFCHRRLKD KKETPVKKQR NTAPLLESPL EDMRVGAENG SDYGSGSGSG 120 SSPLSESRKV ILDDGHTMRR YYDSSPQSVM ELRAIACVEA QLGEPLREDG PILGMEFDPL 180 PPDAFGTPIA SITEQQKRMG YSYEDKVYER HDAKSSKDHA GIRSDAHGLT QSPYHDSLVD 240 TLRGRASPFG AGQISRARLM SQQDKRVHAF SSPQRDDDYL LQRDTFANNR TSAQSNSHPI 300 MGPENPNVFS DAQTFHHDTE LRLERKRKIE EPRTVRDVEA YENRMRKELE KQDILRRKNE 360 ERMRKEMERH DRERRKEEER LMRERQREEE RLLREQKREL ERREKFMQKE YLRAEKRRQK 420 EELRREKEAV KRKAAMEKAT ARKIAKDSLD LIEDEQLELM ELIAASKGLA SIVNLNYDTL 480 QNLNSFRDLL ITFPSESVQL KKPFGFQPWL DSENIGNLLM VWRFFIAFAD VLGLWPFTLD 540 EFVQAFHDYD SRLLSELHVA LLKLIIKDIE DVARTPSIGL GINQYYTANP EGGHPQIVQG 600 AYTWGFDIRN WQQHLNPLTW PEILRQLALS AGFGPQLRKR NATWTGLGDI DEMQVKDCED 660 IISTIRNGSA AENAFALMRE KGLLLPRKSR HRLTPGTVKF AAFHVLSLEG SKGLTVLELA 720 DKIQKSGLRD LTTSKTPEAS ISVALTRDQK LFERIAPSTY CVRAAFRKDP ADAEAILAEA 780 RKKIRIFENG FLGGEVADDV ERDEDSEGDV DEDPEVDDLA TPLSANKSTV PSSKLNTLSV 840 SGKYKVGNDV SLTVQNESEK GLSTFSLNGP KDVMTPIIIE QCVTHKDEGT NNGDGQNIEI 900 DESKSGESWI QGLTEGEYSH LSVEERLNAL VVLVGIANEG NSIRAVLEDR LEAANALKKQ 960 MWAEAQLDRS RFKKEFISKL DFPSLTGGRV ETQVVSSAVE GSRSPLVLVD SKNKEASPSN 1020 AEDQKALAEN VENHLSSVLS EKALVVQDLS MNPDNISVQQ HGYASKRSRS QLKAYVTHLA 1080 EEMYIYRSLP LGQDRRRNRY WQFVASASRN DPCSGRIFVE LHDGNWRVID SEEAFDTLLS 1140 SLDTRGVRES HLRIMLQKIE SSFKENVQRN LRSPNIVCQS GTTDENKKAE TDSSNFPADI 1200 DDPSSMFCVS SSDTFDTFSL FRIELGRNSA EKKGALKRYL DFQNWLWKDC FNSSTLCAMK 1260 FGKKRCEQLL DTCNLCFSSY LSEDTHCLSC HQTFKVDNKN FDFAEHEIQC KEKRFDPGNA 1320 RAFDSCSPLG IRLLTALLGS IEVSVPQEAL ESFWMDIHRK DWGMKLIMSS STEELLQRLT 1380 VFESAIKRER LSSNFETTKE LLGPSASSGS AARDSASLGS VSLLPWMPKT SAAVALRLFE 1440 LDASIIYVKN EKPEPSTDKS VKVYMKLPSR YSDLKNEEVE IKDVKLEEHN KEEIVDLRGK 1500 RSNYKRGRGG HDQGLATKWQ RRVPGLKSDT GRQSSSRGIQ NLNQGPRQQG RKTNLQASSR 1560 GRRTVRKRRV EKTVAKEPML GRMRRVEKTV AKEPLLGRMT NTVAAPMSYL SKKTAARNSY 1620 VKSFRNLDDE DWSAKKGSLN AVGDDNSNSM EEAESDDDVE EEVYEQGNWE PGFKGTSNGW 1680 NRNSVEVSDD DGDASNGIAA MGDDDSEGDI EMSDGSDREA NRVQNDEGLD YADSDEYSD

Sequence ? help Back to Top

Protein Sequence Length: 1739 aa Download sequence Send to blast

MDANSDEEQH NRSKNNVVSS NEGQSKPKRQ MKTPFQLETL EKAYATETYP SEEMRAELSE  60
KLGLSDRQLQ MWFCHRRLKD KKETPVKKQR NTAPLLESPL EDMRVGAENG SDYGSGSGSG  120
SSPLSESRKV ILDDGHTMRR YYDSSPQSVM ELRAIACVEA QLGEPLREDG PILGMEFDPL  180
PPDAFGTPIA SITEQQKRMG YSYEDKVYER HDAKSSKDHA GIRSDAHGLT QSPYHDSLVD  240
TLRGRASPFG AGQISRARLM SQQDKRVHAF SSPQRDDDYL LQRDTFANNR TSAQSNSHPI  300
MGPENPNVFS DAQTFHHDTE LRLERKRKIE EPRTVRDVEA YENRMRKELE KQDILRRKNE  360
ERMRKEMERH DRERRKEEER LMRERQREEE RLLREQKREL ERREKFMQKE YLRAEKRRQK  420
EELRREKEAV KRKAAMEKAT ARKIAKDSLD LIEDEQLELM ELIAASKGLA SIVNLNYDTL  480
QNLNSFRDLL ITFPSESVQL KKPFGFQPWL DSENIGNLLM VWRFFIAFAD VLGLWPFTLD  540
EFVQAFHDYD SRLLSELHVA LLKLIIKDIE DVARTPSIGL GINQYYTANP EGGHPQIVQG  600
AYTWGFDIRN WQQHLNPLTW PEILRQLALS AGFGPQLRKR NATWTGLGDI DEMQVKDCED  660
IISTIRNGSA AENAFALMRE KGLLLPRKSR HRLTPGTVKF AAFHVLSLEG SKGLTVLELA  720
DKIQKSGLRD LTTSKTPEAS ISVALTRDQK LFERIAPSTY CVRAAFRKDP ADAEAILAEA  780
RKKIRIFENG FLGGEVADDV ERDEDSEGDV DEDPEVDDLA TPLSANKSTV PSSKLNTLSV  840
SGKYKVGNDV SLTVQNESEK GLSTFSLNGP KDVMTPIIIE QCVTHKDEGT NNGDGQNIEI  900
DESKSGESWI QGLTEGEYSH LSVEERLNAL VVLVGIANEG NSIRAVLEDR LEAANALKKQ  960
MWAEAQLDRS RFKKEFISKL DFPSLTGGRV ETQVVSSAVE GSRSPLVLVD SKNKEASPSN  1020
AEDQKALAEN VENHLSSVLS EKALVVQDLS MNPDNISVQQ HGYASKRSRS QLKAYVTHLA  1080
EEMYIYRSLP LGQDRRRNRY WQFVASASRN DPCSGRIFVE LHDGNWRVID SEEAFDTLLS  1140
SLDTRGVRES HLRIMLQKIE SSFKENVQRN LRSPNIVCQS GTTDENKKAE TDSSNFPADI  1200
DDPSSMFCVS SSDTFDTFSL FRIELGRNSA EKKGALKRYL DFQNWLWKDC FNSSTLCAMK  1260
FGKKRCEQLL DTCNLCFSSY LSEDTHCLSC HQTFKVDNKN FDFAEHEIQC KEKRFDPGNA  1320
RAFDSCSPLG IRLLTALLGS IEVSVPQEAL ESFWMDIHRK DWGMKLIMSS STEELLQRLT  1380
VFESAIKRER LSSNFETTKE LLGPSASSGS AARDSASLGS VSLLPWMPKT SAAVALRLFE  1440
LDASIIYVKN EKPEPSTDKS VKVYMKLPSR YSDLKNEEVE IKDVKLEEHN KEEIVDLRGK  1500
RSNYKRGRGG HDQGLATKWQ RRVPGLKSDT GRQSSSRGIQ NLNQGPRQQG RKTNLQASSR  1560
GRRTVRKRRV EKTVAKEPML GRMRRVEKTV AKEPLLGRMT NTVAAPMSYL SKKTAARNSY  1620
VKSFRNLDDE DWSAKKGSLN AVGDDNSNSM EEAESDDDVE EEVYEQGNWE PGFKGTSNGW  1680
NRNSVEVSDD DGDASNGIAA MGDDDSEGDI EMSDGSDREA NRVQNDEGLD YADSDEYSD

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	75	82	RRLKDKKE

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator required for the maintenance of the plant vegetative phase. In association with CHR11 or CHR17 may prevent the early activation of the vegetative-to-reproductive transition by regulating key genes that contribute to flower timing, such as FT, SEP1, SEP3, AGL8/FUL, SOC1 and FLC. {ECO:0000269\|PubMed:22694359}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011027774.1	0.0	PREDICTED: uncharacterized protein LOC105127984 isoform X1
Swissprot	F4HY56	0.0	RLT1_ARATH; Homeobox-DDT domain protein RLT1
TrEMBL	A0A2K1YG45	0.0	A0A2K1YG45_POPTR; Uncharacterized protein
STRING	POPTR_0004s04840.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2523	33	69

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G28420.1	0.0	homeobox-1