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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | CCG003868.1 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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| Family | HB-other | ||||||||
| Protein Properties | Length: 1150aa MW: 130342 Da PI: 7.6694 | ||||||||
| Description | HB-other family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | Homeobox | 27 | 7.4e-09 | 5 | 53 | 8 | 56 |
-HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
Homeobox 8 tkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
++ ql++L +++++++yps++++e+ A +Lt +qV+ WF +R ek
CCG003868.1 5 SPLQLQALLKFYAEDKYPSQRAMEDFAVVSNLTFKQVRGWFIEKRRSEK 53
788******************************************9988 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| PROSITE profile | PS50071 | 11.24 | 1 | 55 | IPR001356 | Homeobox domain |
| SMART | SM00389 | 8.3E-6 | 1 | 59 | IPR001356 | Homeobox domain |
| SuperFamily | SSF46689 | 1.92E-9 | 3 | 57 | IPR009057 | Homeodomain-like |
| Gene3D | G3DSA:1.10.10.60 | 3.1E-8 | 3 | 57 | IPR009057 | Homeodomain-like |
| CDD | cd00086 | 2.59E-8 | 3 | 56 | No hit | No description |
| Pfam | PF00046 | 2.0E-6 | 5 | 53 | IPR001356 | Homeobox domain |
| SMART | SM00571 | 3.5E-11 | 386 | 445 | IPR018501 | DDT domain |
| PROSITE profile | PS50827 | 12.922 | 386 | 445 | IPR018501 | DDT domain |
| Pfam | PF02791 | 8.0E-10 | 387 | 442 | IPR018501 | DDT domain |
| Pfam | PF15612 | 1.5E-6 | 666 | 706 | IPR028942 | WHIM1 domain |
| Pfam | PF15613 | 1.5E-11 | 799 | 872 | IPR028941 | WHIM2 domain |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0003677 | Molecular Function | DNA binding | ||||
| Sequence ? help Back to Top |
|---|
| Protein Sequence Length: 1150 aa Download sequence Send to blast |
MKRKSPLQLQ ALLKFYAEDK YPSQRAMEDF AVVSNLTFKQ VRGWFIEKRR SEKSKNELIE 60 PPRLTKKLSV FKGRKGAAVA SDARKMLKQL ELSASTIVKS NKPSSSKYKH APSEVQGRIG 120 KRRKKLVLIQ DLLTSDYILG KIFRKDGPPL GLEFDSLPTR AFHGCEDSRN SHPVHQENQR 180 ANKRGKVSMC AAFDDQNCNE SAPVKKHGMG KGLMTVWRVT NPDGGDFPTG IHCGGSQITV 240 TPQISTPMPR KQPPQKKMRR QPVSSLVKQR MLQKELQEKR KPSVKRREAE SKRDEIQKQS 300 FREKCELALE RLMNQDRLNQ FAMLVDDEEL ELRELRAGPN PLTCTEHFAA NRLYGCSLCK 360 DVLVKFPPNS VKLKQPFAMQ PWDSSPEAVK KLFKVFHFLY TYSVTVDICP FTLDELAQAF 420 HDKDSFLLGK IHVALLKLLL SDVETEISSG LLPHLSISCK FLALLHSVED QEFVVEFWKN 480 SLNPLTWTEI LCQVLIAAGY GSKQGGFRRE VLSKEMSLMV KYGLHPGTLK GELFQLLSVQ 540 GNNGLKVSDL AKSSQIVELN LASTTDELEL LICSTLSSDI TLFEKISSST FRLRINTLAK 600 EASGFQSDTE DSGIVHEDFH DNGASSSSNS DCDSENSSPR NLKLIDYPKR KNKMLTFENE 660 IDESCPGEVW LLGLMEGEYS DLSIEEKLNG LVALIDLVSA GSSIRVEDLA KPTIESVPNI 720 YHHGSGAKIK RSSMKDNVPR PSWVHAGQIN DTKEAYNSSK FFPVDSSVLF SKPDGKDKLS 780 GKEKETEGMG LGINLHPMQS IFLGSDRRYN RYWLFLGPCN SYDPGHKRVY FESSEDGHWE 840 VIDTEEALRA LLSVLDDRGR REALLIESLE KRETFLCQEM SSKMVNDSGV GYFTQSDQPE 900 LETVREDSSS PVSDVDNNLT LTDIANDSLP PMSAIVLETG KKGKEENQKW NRLRQYDTWI 960 WNCFYCDLNA VKRSKRSYLE SLRRCETCHD LYWRDEKHCK ICHTTFELDF DLEERYAIHS 1020 ATCRQKEDNV MCPKHKVLSS KLQSLKAAVY AIETVMPEDA LVGAWTKSAH RLWVRRLRRT 1080 SSLAELLQVV ADFVAAINED WLCQCNLAQG SSTYMEEIIT CFPTMPQTSS ALALWLMKLD 1140 ELISPYLEKI |
| Functional Description ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Description | |||||
| UniProt | Transcriptional regulator required for the maintenance of the plant vegetative phase. May prevent the early activation of the vegetative-to-reproductive transition by regulating key genes that contribute to flower timing. {ECO:0000250|UniProtKB:F4HY56}. | |||||
| Annotation -- Nucleotide ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | |||
| GenBank | AC216591 | 0.0 | AC216591.1 Populus trichocarpa clone POP002-D23, complete sequence. | |||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_011008202.1 | 0.0 | PREDICTED: uncharacterized protein LOC105113647 isoform X1 | ||||
| Refseq | XP_011008203.1 | 0.0 | PREDICTED: uncharacterized protein LOC105113647 isoform X1 | ||||
| Refseq | XP_011013124.1 | 0.0 | PREDICTED: uncharacterized protein LOC105117236 isoform X1 | ||||
| Refseq | XP_011013125.1 | 0.0 | PREDICTED: uncharacterized protein LOC105117236 isoform X1 | ||||
| Refseq | XP_011013126.1 | 0.0 | PREDICTED: uncharacterized protein LOC105117236 isoform X1 | ||||
| Swissprot | F4JRF5 | 0.0 | RLT3_ARATH; Homeobox-DDT domain protein RLT3 | ||||
| TrEMBL | A0A2K1XYM7 | 0.0 | A0A2K1XYM7_POPTR; Uncharacterized protein | ||||
| STRING | POPTR_0014s17140.1 | 0.0 | (Populus trichocarpa) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Fabids | OGEF6118 | 15 | 19 |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT4G12750.1 | 0.0 | Homeodomain-like transcriptional regulator | ||||
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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