PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG003790.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

HD-ZIP

Protein Properties

Length: 214aa MW: 24076.3 Da PI: 8.5005

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG003790.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	57.3	2.7e-18	54	108	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ +++keq + Lee F++++ ++ +++e LA +l+L rqV vWFqNrRa+ k CCG003790.1 54 RKKLRLSKEQSRLLEESFRQHHSLNPRQKEALALQLKLRPRQVEVWFQNRRARSK 108 788899***********************************************98 PP
2	HD-ZIP_I/II	117	1e-37	54	142	1	90
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 +kk+rlskeq++lLEesF++++ L+p++K++la +L+l+prqv+vWFqnrRAR k+kq+E+++e+Lkr++ +l+e+n+rL++eveeLr + CCG003790.1 54 RKKLRLSKEQSRLLEESFRQHHSLNPRQKEALALQLKLRPRQVEVWFQNRRARSKLKQTEMECEYLKRWFGSLTEQNRRLQREVEELR-A 142 69*************************************************************************************9.4 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	8.3E-18	38	108	IPR009057	Homeodomain-like
SuperFamily	SSF46689	3.59E-18	43	111	IPR009057	Homeodomain-like
PROSITE profile	PS50071	16.746	50	110	IPR001356	Homeobox domain
SMART	SM00389	2.0E-16	52	114	IPR001356	Homeobox domain
CDD	cd00086	1.16E-15	53	111	No hit	No description
Pfam	PF00046	1.4E-15	54	108	IPR001356	Homeobox domain
PROSITE pattern	PS00027	0	85	108	IPR017970	Homeobox, conserved site
Pfam	PF02183	1.1E-9	110	144	IPR003106	Leucine zipper, homeobox-associated
SMART	SM00340	3.4E-22	110	153	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 214 aa Download sequence Send to blast
MAVSRSSSSS LELTMSMPVK DLDINQVPSG AEEEEWISAG MEDEEESTDG APPRKKLRLS 60 KEQSRLLEES FRQHHSLNPR QKEALALQLK LRPRQVEVWF QNRRARSKLK QTEMECEYLK 120 RWFGSLTEQN RRLQREVEEL RALKVGPPTV ISPHSCEPLP ASTLTMCPRC ERVTTTGVDK 180 GSTKTTRTAV ANPTIAATLS SENGAPALQS RQSC

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	102	110	RRARSKLKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription repressor that binds to the DNA sequence 5'-CAAT[GC]ATTG-3'. {ECO:0000269\|PubMed:10732669}.
UniProt	Probable transcription repressor that binds to the DNA sequence 5'-CAAT[GC]ATTG-3'. {ECO:0000269\|PubMed:10732669}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011038655.1	1e-146	PREDICTED: homeobox-leucine zipper protein HOX3
Swissprot	Q0JKX1	3e-81	HOX3_ORYSJ; Homeobox-leucine zipper protein HOX3
Swissprot	Q9XH38	3e-81	HOX3_ORYSI; Homeobox-leucine zipper protein HOX3
TrEMBL	A0A2K1YSC3	1e-141	A0A2K1YSC3_POPTR; Uncharacterized protein
STRING	POPTR_0010s12300.1	1e-144	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF9506	30	40

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G01430.1	9e-70	homeobox-leucine zipper protein 17