PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG001330.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family NAC
Protein Properties Length: 397aa    MW: 44303.3 Da    PI: 8.2378
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG001330.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM180.93.2e-56782051128
          NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kg 97 
                  lppGfrFhPtdeel+++yL++k+++ ++++ ++i +vd++k+ePwdLp k+k +ekewyfFs rd+ky+tg r+nrat++gyWk+tgkdke++++ ++
  CCG001330.1  78 LPPGFRFHPTDEELITYYLQNKISDADFSC-RAIGDVDLNKCEPWDLPGKAKMGEKEWYFFSLRDRKYPTGVRTNRATNTGYWKTTGKDKEIFNSvTS 174
                  79****************************.89***************99999****************************************99899 PP

          NAM  98 elvglkktLvfykgrapkgektdWvmheyrl 128
                  +lvg+kktLvfy+grap+gekt+Wvmheyr+
  CCG001330.1 175 QLVGMKKTLVFYRGRAPRGEKTNWVMHEYRV 205
                  99***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.96E-6475226IPR003441NAC domain
PROSITE profilePS5100560.61178226IPR003441NAC domain
PfamPF023653.8E-2979205IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 397 aa     Download sequence    Send to blast
MNEVHKLGGA ACVLVFLTLS TSYCSLPLEP RPEQSWLADV EETYWLLGIW IQNPISDKGK  60
KQIGKEKDME GDAKEETLPP GFRFHPTDEE LITYYLQNKI SDADFSCRAI GDVDLNKCEP  120
WDLPGKAKMG EKEWYFFSLR DRKYPTGVRT NRATNTGYWK TTGKDKEIFN SVTSQLVGMK  180
KTLVFYRGRA PRGEKTNWVM HEYRVHAKAA FRTSKDEWVV CRIFQKSAGA KKYPSNQSRA  240
GNPLYNLEIG PSVMPSQMMQ AADNFQLPIG RNYMMSNAEL QAELARVFRA GGSTGINLPM  300
QSPLTNSYSV GGGAGGCFTV SGLNLNLGGA TSQPALRPMP PPVMNQQDVT PSMMTSTSSY  360
AVEQAAYGAE MNNANGPSNR FMGMQQCMDL ENYWPAY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A6e-577723216171NO APICAL MERISTEM PROTEIN
1ut4_B6e-577723216171NO APICAL MERISTEM PROTEIN
1ut7_A6e-577723216171NO APICAL MERISTEM PROTEIN
1ut7_B6e-577723216171NO APICAL MERISTEM PROTEIN
3swm_A6e-577723219174NAC domain-containing protein 19
3swm_B6e-577723219174NAC domain-containing protein 19
3swm_C6e-577723219174NAC domain-containing protein 19
3swm_D6e-577723219174NAC domain-containing protein 19
3swp_A6e-577723219174NAC domain-containing protein 19
3swp_B6e-577723219174NAC domain-containing protein 19
3swp_C6e-577723219174NAC domain-containing protein 19
3swp_D6e-577723219174NAC domain-containing protein 19
4dul_A6e-577723216171NAC domain-containing protein 19
4dul_B6e-577723216171NAC domain-containing protein 19
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00277DAPTransfer from AT2G24430Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011045043.10.0PREDICTED: NAC domain-containing protein 100-like isoform X3
TrEMBLA0A2K1WTU10.0A0A2K1WTU1_POPTR; Uncharacterized protein
STRINGPOPTR_0018s03910.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF50733253
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24430.21e-118NAC domain containing protein 38