PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PEQU_40981

Organism

Phalaenopsis equestris

Taxonomic ID

78828

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis

Family

TCP

Protein Properties

Length: 333aa MW: 34736.9 Da PI: 10.064

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PEQU_40981	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	129.7	2.8e-40	49	161	4	114
TCP 4 kkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssgkaaksaa.kskks 100 k++++++hTkv+gR+RR+R++a caar+F+L++eLG+++d++tieWLlqqa+pai++ tgt++++a+++ ++s +s++s+ s++ ++++ +++ + PEQU_40981 49 PKRSSKDRHTKVDGRGRRIRMPAACAARVFQLTRELGHKSDGETIEWLLQQAEPAIIATTGTGTIPANFSsLNVSLRSTGSSLSAPTSKSAPLfTHHYE 147 689****************************************************************99988888888888777777666666677777 PP TCP 101 qksaasalnlakes 114 ++++s+l++++ PEQU_40981 148 ITDPSSMLAFQQPD 161 77777777777643 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	3.1E-38	52	149	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	27.706	53	107	IPR017887	Transcription factor TCP subgroup

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0048510	Biological Process	regulation of timing of transition from vegetative to reproductive phase
GO:0005634	Cellular Component	nucleus

Sequence ? help Back to Top
Protein Sequence Length: 333 aa Download sequence Send to blast
MDQTDHRHSM VHPPPPPATS ALLTGSSHVD SSLVISSSKP KTAAAIPPPK RSSKDRHTKV 60 DGRGRRIRMP AACAARVFQL TRELGHKSDG ETIEWLLQQA EPAIIATTGT GTIPANFSSL 120 NVSLRSTGSS LSAPTSKSAP LFTHHYEITD PSSMLAFQQP DVPLVAESTD TYLRKRFREN 180 LFKEEQEGAG AAASSSPPKP GSRPVIPATM WAVAPGSSGG AGAFWMLPVT APEAPSSLWT 240 FPTAGASSMQ APLQFGRAMG GMQLGSMFPA VQHLGLGISD SNLGMIGSIN PYSRSGRGGG 300 GEGGTVMNAD HGSGIDRRRS SQSGGGEGNS NSQ

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00614	PBM	Transfer from AT1G35560	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020591603.1	0.0	transcription factor PCF3-like
Swissprot	Q9LQF0	6e-62	TCP23_ARATH; Transcription factor TCP23
TrEMBL	A0A1D6ZNE7	0.0	A0A1D6ZNE7_PHAEQ; TCP transcription factor
STRING	Gorai.012G166500.1	2e-79	(Gossypium raimondii)
STRING	PGSC0003DMT400064164	4e-79	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4934	26	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G35560.1	6e-45	TCP family protein