PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_19787
Organism
Phalaenopsis equestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family ARF
Protein Properties Length: 926aa    MW: 103673 Da    PI: 5.9042
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_19787genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B374.21.5e-23107208199
                 EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
          B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                 f+k+lt sd++++g +++p++ ae++       +++++ ++l+ +d++  sW++++iyr++++r++lt+GW+ Fv+ ++L +gD+vvF   ++++ +l+
  PEQU_19787 107 FCKTLTASDTSTHGGFSVPRRAAEKIfppldfTLQPPT-QELVAKDLHDISWTFRHIYRGQPKRHLLTTGWSVFVSTKKLLAGDSVVFI--RDEKSQLL 202
                 99*****************************9667666.49************************************************..45677789 PP

                 EEEE-S CS
          B3  94 vkvfrk 99 
                 ++++r+
  PEQU_19787 203 LGIRRA 208
                 999986 PP
2Auxin_resp110.81.4e-36233314182
  Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsL 82 
                 aa+aa+++s+F+++YnPras+seF+++++k++kal ++vs+GmRf+m+fete++  r+++Gt++g+sd+dpvrW+ S+W ++
  PEQU_19787 233 AAQAAANSSPFTIFYNPRASPSEFIIPLSKYNKALCTQVSLGMRFRMMFETEECGVRHYMGTITGISDFDPVRWKASQWHNI 314
                 789****************************************************************************876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019366.41E-4497235IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.108.5E-4199222IPR015300DNA-binding pseudobarrel domain
CDDcd100174.22E-21106207No hitNo description
SMARTSM010193.7E-24107209IPR003340B3 DNA binding domain
PfamPF023626.9E-22107208IPR003340B3 DNA binding domain
PROSITE profilePS5086312.308107209IPR003340B3 DNA binding domain
PfamPF065071.5E-31233314IPR010525Auxin response factor
PfamPF023092.8E-8823909IPR033389AUX/IAA domain
PROSITE profilePS5174524.619824907IPR000270PB1 domain
SuperFamilySSF542771.32E-8835902No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009638Biological Processphototropism
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009785Biological Processblue light signaling pathway
GO:0010311Biological Processlateral root formation
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0048366Biological Processleaf development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 926 aa     Download sequence    Send to blast
INSELWQACA GPLVSLPPAG SHVVYFPQGH IEEVAASIQQ EMDCNPNYLL LPSKMICVLQ  60
NVTLHADNET DEVFAQMTLQ PVNKVGRVAL IASEMGLEQS KQPTEFFCKT LTASDTSTHG  120
GFSVPRRAAE KIFPPLDFTL QPPTQELVAK DLHDISWTFR HIYRGQPKRH LLTTGWSVFV  180
STKKLLAGDS VVFIRDEKSQ LLLGIRRAKR QQPAFSSSVL SSDSMHIGIL AAAAQAAANS  240
SPFTIFYNPR ASPSEFIIPL SKYNKALCTQ VSLGMRFRMM FETEECGVRH YMGTITGISD  300
FDPVRWKASQ WHNIEVGWDE LTAADRPTRV SLWEIEPVAT PFYICPPPFF RPKFPEQPGM  360
SDVEAEAENT FKSAIPCLGD DFGLKSTQSQ LFPGLSLVQW MAMQQNSQLN FSQPTYLPSL  420
AASIPDSLIC NDSTKLLSFQ SQASSVPNHQ GGFKLNPQSQ QSDQLKNLQQ QTSTEIQFQQ  480
QQQQQQQQPM AERLQHLKQK KNYNQQQDQQ QLDAQKQQIL TQAQLLNEQL QPSAYQMQQQ  540
QVLQKQNSHP LPEEILLNQT TVQPPVLLQS NSSSQQPVDL QQYSLFQQQQ TKMQLLQKLQ  600
HQQVLSQLSA QPHSQLSQQL PVQNQQLHKQ QYFQRLSANH IAGHSNPQLL ARTSPSPSKS  660
NAPSCSTSPS STCQISGLPS QVLHELQNKH ETQVIKETNN ISSSTSSFCL DGISQEGFSL  720
SPVCLDADVR HNPHNDLLTG TNTDILLQYP VLSRGLSSGK DMEDFLPSYC NQRDVENDST  780
AAVSSQTFSM QDMSFNPGCS GDTCFSEVGT LSQAMWANQS QPMRTYTKVQ KRGSVGRSID  840
VSRYHGYEEL RHDLACMFGI VELEDPIGTD WKLVYVDHEN DILLVGDDPW EEFVNCVQSI  900
RILSSLEVQQ MSLAGDLPNV AFQRQA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-160133651388Auxin response factor 5
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020576196.10.0auxin response factor 16-like isoform X2
TrEMBLA0A2I0V7N20.0A0A2I0V7N2_9ASPA; Auxin response factor
STRINGTRIUR3_33045-P10.0(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP90453338
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19220.10.0auxin response factor 19