PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_15453
Organism
Phalaenopsis equestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family ARF
Protein Properties Length: 926aa    MW: 103895 Da    PI: 5.1714
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_15453genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B372.84.2e-23113218199
                 EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SS.SEE. CS
          B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.gr.sefe 91 
                 f+k lt sd++++g +++p++ ae+        +++++ ++l+++d++ ++W++++iyr++++r++lt+GW+ Fv a++Lk+gD+v++++d  r ++ +
  PEQU_15453 113 FCKNLTASDTSTHGGFSVPRRAAEKLfpqldyAMQPPS-QELIVRDLHDNVWTFRHIYRGQPKRHLLTTGWSLFVGAKRLKAGDSVLIMYDlFRdEKSQ 210
                 89*********************999*****9656554.59************************************************9884549998 PP

                 .EEEEE-S CS
          B3  92 lvvkvfrk 99 
                 l+++++r+
  PEQU_15453 211 LLLGLRRS 218
                 99999886 PP
2Auxin_resp109.53.5e-36243325183
  Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                 aahaa+++s F+v+YnPra++seF+++++k++ka++++v +GmRf m+f te+s +rr+ Gt vg+sd+dp+rWpnSkWr+L+
  PEQU_15453 243 AAHAAASSSSFTVYYNPRACSSEFIIPLAKYQKAVYTHVYIGMRFGMMFATEESTKRRCVGTLVGISDFDPLRWPNSKWRNLQ 325
                 79*******************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019363.4E-42100246IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.4E-37105231IPR015300DNA-binding pseudobarrel domain
CDDcd100173.65E-20112217No hitNo description
PfamPF023625.5E-21113218IPR003340B3 DNA binding domain
SMARTSM010197.2E-20113219IPR003340B3 DNA binding domain
PROSITE profilePS5086312.464113219IPR003340B3 DNA binding domain
PfamPF065071.2E-31243325IPR010525Auxin response factor
PROSITE profilePS5174525.81825909IPR000270PB1 domain
SuperFamilySSF542774.38E-8839904No hitNo description
PfamPF023091.9E-8870913IPR033389AUX/IAA domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009733Biological Processresponse to auxin
GO:0009908Biological Processflower development
GO:0009942Biological Processlongitudinal axis specification
GO:0010305Biological Processleaf vascular tissue pattern formation
GO:0048364Biological Processroot development
GO:0048507Biological Processmeristem development
GO:0005634Cellular Componentnucleus
GO:0016020Cellular Componentmembrane
GO:0042802Molecular Functionidentical protein binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 926 aa     Download sequence    Send to blast
SGAKKILNSE LWHACAGPLV SLPRPGSLVY YFPQGHSEQV STSTRRTIHS QIPSYTNLPS  60
QMLCQVHNVT LHADRDSDEI YAQMTLQPVN SVSDVFQITD FGYAKSKQPT EFFCKNLTAS  120
DTSTHGGFSV PRRAAEKLFP QLDYAMQPPS QELIVRDLHD NVWTFRHIYR GQPKRHLLTT  180
GWSLFVGAKR LKAGDSVLIM YDLFRDEKSQ LLLGLRRSNS QQTSLPSSVL SADSMHIGVL  240
AAAAHAAASS SSFTVYYNPR ACSSEFIIPL AKYQKAVYTH VYIGMRFGMM FATEESTKRR  300
CVGTLVGISD FDPLRWPNSK WRNLQVEWDE LGYDERPARV SIWEIETTES LFVFPPSLKR  360
HCIPGLMGMD FGAGNMKHFL QDYTNGDLHT LQSKLDSEHL IKKTIKQQSS HLGSEIGCQQ  420
SVFATILQKI KTNGFSATSS STLPTLMATE AASLHEELIT QISMKENNTS FGPPEQASPF  480
EDNNPSESQN IYYCPEQQGL LMAAKVVTQF SAETAWRNCH ELNDHIHKCE NVSVEEKTDV  540
ESEHLHDKMK TTSDMSQISG NSERFSLATL PGNEINKNEN FINSTASENR LHDPHIDQQQ  600
LEPSNVGSSN SLIRNLPYEE CQLYQSSGNE DLMLQHSLYQ SLAPNILHNS STRPDNLFLS  660
DNFEVLNPFQ FSSFSDTFSP TFMPVFAEEA YDYREISSSE EIPVSSHAED LKSGIEENVS  720
PELLELCGLR DPSNEATCSN FHSESTVLEE FSAAKNSTFP GTLEDSFSCF AMNHDLQSQL  780
TSTSLADSQI FSFQDLPDNS AGASSGNIDA NDYNYLGMHG MKPLRTYTKV QKLGSVGRSI  840
DLKRFQNYEQ LRSAIVRMFG LLGQPGDPKH SEWKLVYVDQ ENDVLLVGDD PWDEFVNCVR  900
CIRILSPSEV QQMSQEGLQI MNSYLP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A0.0135044392Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00153DAPTransfer from AT1G19850Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020579313.10.0auxin response factor 5-like
SwissprotQ01K260.0ARFK_ORYSI; Auxin response factor 11
SwissprotQ8S9830.0ARFK_ORYSJ; Auxin response factor 11
TrEMBLA0A2I0WIL60.0A0A2I0WIL6_9ASPA; Auxin response factor 11
STRINGXP_010271412.10.0(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP86733241
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19850.10.0ARF family protein
Publications ? help Back to Top
  1. Shen C, et al.
    Functional analysis of the structural domain of ARF proteins in rice (Oryza sativa L.).
    J. Exp. Bot., 2010. 61(14): p. 3971-81
    [PMID:20693412]
  2. Indoliya Y, et al.
    Decoding regulatory landscape of somatic embryogenesis reveals differential regulatory networks between japonica and indica rice subspecies.
    Sci Rep, 2016. 6: p. 23050
    [PMID:26973288]