PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_14910
Organism
Phalaenopsis equestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family ARF
Protein Properties Length: 644aa    MW: 72324.9 Da    PI: 6.1201
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_14910genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B377.61.4e-24113214199
                 EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
          B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 
                 f k+lt+sd+++ g +++p+ +ae++        +++ +  ++ ++d++g+ W++++iyr++++r++lt+GW++Fv++++L +gD+vvF   +++++ l
  PEQU_14910 113 FAKTLTQSDANNGGGFSVPRYCAETIfprldysAMPPVQ--MVLVKDLHGKIWKFRHIYRGTPRRHLLTTGWSNFVNEKKLVAGDSVVFL--RTDNGDL 207
                 89****************************998666666..79999********************************************..4478888 PP

                 EEEEE-S CS
          B3  93 vvkvfrk 99 
                 +v+++r+
  PEQU_14910 208 CVGIRRA 214
                 ****996 PP
2Auxin_resp105.56.3e-35275358183
  Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                 aa+ a+ +++Fe vY+Pr+s+seFvvk   v++a++v++++GmRfkmafetedss++++ +Gtv++v+ + p+rWp+S+Wr+L+
  PEQU_14910 275 AATLAAYGKPFEAVYYPRSSESEFVVKEPAVRSAMRVQWCPGMRFKMAFETEDSSRISWfMGTVSAVQVACPMRWPGSPWRLLE 358
                 67889999*************************************************************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.105.3E-37106215IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.22E-30109216IPR015300DNA-binding pseudobarrel domain
CDDcd100173.87E-22112213No hitNo description
PfamPF023621.1E-22113214IPR003340B3 DNA binding domain
SMARTSM010194.2E-22113215IPR003340B3 DNA binding domain
PROSITE profilePS5086313.789113215IPR003340B3 DNA binding domain
PfamPF065071.3E-29275357IPR010525Auxin response factor
PROSITE profilePS5174514.678558638IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 644 aa     Download sequence    Send to blast
MADIEDCLDS QLWHACAGGM VQMPLVNSLV YYCPQGHAEH AKSSVEFDGS MKIPPLILCR  60
VLSVKYKADA DTDEVFAEIR MVPLRPNELD HFEEEGVSVG SNGLDIQEKP ISFAKTLTQS  120
DANNGGGFSV PRYCAETIFP RLDYSAMPPV QMVLVKDLHG KIWKFRHIYR GTPRRHLLTT  180
GWSNFVNEKK LVAGDSVVFL RTDNGDLCVG IRRAKFINDL SVGWNHKNCT FGGLTAFLRE  240
GDRRMIRDDD DRIRISFDSN SKGKGKLKAD SVMEAATLAA YGKPFEAVYY PRSSESEFVV  300
KEPAVRSAMR VQWCPGMRFK MAFETEDSSR ISWFMGTVSA VQVACPMRWP GSPWRLLEVS  360
WDEPDLLQNV TRVSPWSVEL VSNMTSIHFK PFSPPQKKLR ITHHLDSPFD LQIPSLPFLP  420
NPESPLLQDG TTPAASIQGA RQILPELHFR KLQPGLFYSG IHVASNSPNY EDESNFLSIG  480
YPPRSTSNEG NEESNAKKPQ LILFGKQIFT EPQLSLSINS SLDVNHDIHQ NNMGDDNSPS  540
VKVSLHSDLN ENDSGSELVH CKVFMESEDV GHTLDLSAFD SYEEMYGRLT NMFGIERSEL  600
TSRVFYRDTA GEVKHPKDEP FAKFMNVARR LTISMDSSCS NIGK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A2e-80837951388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020584874.10.0auxin response factor 18-like
RefseqXP_020584875.10.0auxin response factor 18-like
SwissprotQ653H70.0ARFR_ORYSJ; Auxin response factor 18
TrEMBLA0A2I0VDE20.0A0A2I0VDE2_9ASPA; Auxin response factor
STRINGXP_008791554.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP51637152
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30080.10.0auxin response factor 16
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Huang J,Li Z,Zhao D
    Deregulation of the OsmiR160 Target Gene OsARF18 Causes Growth and Developmental Defects with an Alteration of Auxin Signaling in Rice.
    Sci Rep, 2016. 6: p. 29938
    [PMID:27444058]