PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_09678
Organism
Phalaenopsis equestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family ARF
Protein Properties Length: 726aa    MW: 81137.6 Da    PI: 6.7865
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_09678genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B368.21.1e-21138239199
                 EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
          B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                 f+k+lt sd++++g +++p++ ae+       +++ ++ +++  +d++g +W +++ yr+ ++r++lt+GW+ F + ++L +gD v+F   + +++el+
  PEQU_09678 138 FCKTLTASDTSTHGDFCVPRRAAEDWfppldyEQERPC-QEILAKDLHGVEWHFRHVYRGDPRRHLLTTGWSAFINKKNLVSGDAVLFL--RGNDGELR 233
                 99*********************999****97444445.69************************************************..4489999* PP

                 EEEE-S CS
          B3  94 vkvfrk 99 
                 ++++r+
  PEQU_09678 234 LGIRRA 239
                 ***997 PP
2Auxin_resp99.35.3e-33267348283
  Auxin_resp   2 ahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                 a++++++++F++ Y+Pr+ +s+F+++++k+ k+++  + vG+Rfkm+  +ed++err++G++++vsd+dp+rWp+SkWr+L+
  PEQU_09678 267 ANSITSRNIFQISYYPRVNQSQFIIPYWKFTKSCSYTIPVGTRFKMSAAGEDAAERRFTGLITAVSDFDPLRWPGSKWRNLE 348
                 68899**************************************************************************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019363.01E-38126242IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.104.0E-36136250IPR015300DNA-binding pseudobarrel domain
CDDcd100174.68E-20136238No hitNo description
SMARTSM010191.1E-18138240IPR003340B3 DNA binding domain
PROSITE profilePS5086313.042138240IPR003340B3 DNA binding domain
PfamPF023621.4E-19138239IPR003340B3 DNA binding domain
PfamPF065071.3E-27267347IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 726 aa     Download sequence    Send to blast
MAIDLNTLGD ESEESAEQKK RPHESVCLEL WHACAGMRTP LPRKGSLLVY LPQGHLEQLA  60
GGGDDVLLRY GVPPHVFCRI VDVQLRAEAA TDEIYAQLYV VADGEGSGRH VHEDRAERDG  120
EELDDMDNDT KSPFLHMFCK TLTASDTSTH GDFCVPRRAA EDWFPPLDYE QERPCQEILA  180
KDLHGVEWHF RHVYRGDPRR HLLTTGWSAF INKKNLVSGD AVLFLRGNDG ELRLGIRRAS  240
QIKERISHIM SSSQSLNAGS GSLQSLANSI TSRNIFQISY YPRVNQSQFI IPYWKFTKSC  300
SYTIPVGTRF KMSAAGEDAA ERRFTGLITA VSDFDPLRWP GSKWRNLEVR WDDVNVVNKN  360
RHNRVSPWEI ERSGSFSSPN SLLTSGSKRS RVIPPSINAD YPLTRENGYQ NLGKSVSLRK  420
VFQGQEILSF NAPYFNRGDA ALTPRVSEMR NDSFPKKRCT ANSSSFWLSG SGCGATDPPK  480
NSSFFYRFHE VLQGQEMVRV LPSFPGLAAE SQSRNGALKI LKSSISGSSS DDRFESFSTL  540
MQPCFSSAQT SSPSSVLLFQ QPTSHLPSSH SFDDSNDREK TDDMNLGFGF TKERSSCRLF  600
GVSLTEKFSD ENVVAGGGNR DPPEQSDFCC NGGDFGESVR SHEVLQGQEI VKLFDSFGSF  660
MESHRKQTSR RPIEKDNRSI LHCNDSSCML FGFPLTENIP AAGTLSSTSI ESSFSRHLPR  720
TMVAQE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A9e-992437717359Auxin response factor 1
4ldw_A9e-992437717359Auxin response factor 1
4ldw_B9e-992437717359Auxin response factor 1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020575216.10.0auxin response factor 3-like isoform X2
TrEMBLA0A2I0AU810.0A0A2I0AU81_9ASPA; Auxin response factor
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP25373580
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33860.11e-142ARF family protein