PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_03892
Organism
Phalaenopsis equestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family ARF
Protein Properties Length: 894aa    MW: 99432.8 Da    PI: 6.4407
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_03892genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B376.92.3e-24132233199
                 EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
          B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                 f+k+lt sd++++g +++p++ ae+       +++++  ++l+ +d++g++W++++i+r++++r++lt+GW+ Fv+a++L +gD+v+F   ++++ +l+
  PEQU_03892 132 FCKTLTASDTSTHGGFSVPRRAAEKVfppldfSLQPPA-QELIARDLHGNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVTGDSVLFI--WNENNQLL 227
                 99*****************************9777666.49************************************************..7888889* PP

                 EEEE-S CS
          B3  94 vkvfrk 99 
                 ++++r+
  PEQU_03892 228 LGIRRA 233
                 ***997 PP
2Auxin_resp115.83.8e-38258341183
  Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                 aahaa+t+s F+++YnPra++seFv++++k+ ka++ ++vsvGmRf+m fete+ss rr++Gt++g+sdl+pv+Wp S+Wrs+k
  PEQU_03892 258 AAHAAATNSRFTIFYNPRACPSEFVIPLAKYIKAVYhTRVSVGMRFRMLFETEESSVRRYMGTITGISDLNPVHWPSSHWRSVK 341
                 79*********************************9789******************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.96E-48117261IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.0E-42123247IPR015300DNA-binding pseudobarrel domain
CDDcd100172.56E-22131232No hitNo description
SMARTSM010191.6E-25132234IPR003340B3 DNA binding domain
PROSITE profilePS5086313.197132234IPR003340B3 DNA binding domain
PfamPF023626.2E-23132233IPR003340B3 DNA binding domain
PfamPF065074.2E-33258341IPR010525Auxin response factor
SuperFamilySSF542771.96E-7757835No hitNo description
PROSITE profilePS5174523.055763845IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009733Biological Processresponse to auxin
GO:0009908Biological Processflower development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 894 aa     Download sequence    Send to blast
MRLSSSSLSS SDLTQLPQEG EQRCLNSELW HACAGPLVSL PLVGTRVVYF PQGHSEQVAA  60
STNKEIDSHI PNYPSLPPQL ICQLHDVTMH ADVETDEVYA QMTLQPLNPQ EQKDPYLPAE  120
LGAASKQPTN YFCKTLTASD TSTHGGFSVP RRAAEKVFPP LDFSLQPPAQ ELIARDLHGN  180
EWKFRHIFRG QPKRHLLTTG WSVFVSAKRL VTGDSVLFIW NENNQLLLGI RRANRPQTVM  240
PSSVISSDSM HIGLLAAAAH AAATNSRFTI FYNPRACPSE FVIPLAKYIK AVYHTRVSVG  300
MRFRMLFETE ESSVRRYMGT ITGISDLNPV HWPSSHWRSV KVGWDESTAA ERQPRVSLWE  360
IEPLTTFPMY PSPFSLRLKR PWPPGLPPLY GGNIGDLGLN SALAWLRDSG NLGVQPLNFQ  420
GIGVSPYNNS SLGLKPDIYQ ATTVEAIQDM RPIEPLKQVP TSIQFQHTPS IINRPNNLQS  480
NQALQQPQSQ QPFVQNSQEN HGHNHTPSGF FHQQVQQCQS FGDQQQQLKQ IQQNPHVQRQ  540
QQQQQKQFYD QLISGIMLGQ TMQPSVSQSQ SPTLQKISSI SQPPSFPDSN GNYVSTSVTS  600
SLNGFLQPFS YEESSNLLSS PMTSPWLSKQ TALDPLLPSG VQCVLPQVDQ FSSLFPDISR  660
DTTMLAPFPG RECSNNHGVD PQHLLFGANL ELSPLLVQNG VPGLRSIGCE SNTARVSHAA  720
TNFLSTNEVD FQLNQALTSS GGLEESGLLH SPDNNGQEIS QNGTYVKVYK SGTFGRSLDI  780
TRYNSYPELR SELGRLFGLD LEDPLRSGWQ LVFVDRENDV LLVGDDPWPE FVNNVWCIKI  840
LSLQEVQQMS KQGVNLINSA PLRRLSTGSC DNYIAQQESR NLSSEIMPVG SLDY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1591836243388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00033PBMTransfer from AT5G37020Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020588473.10.0auxin response factor 17-like
RefseqXP_020588482.10.0auxin response factor 17-like
SwissprotQ653U30.0ARFQ_ORYSJ; Auxin response factor 17
TrEMBLA0A2I0VIV40.0A0A2I0VIV4_9ASPA; Auxin response factor
STRINGXP_008777704.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20123685
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30330.10.0auxin response factor 6
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]