PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_03694
Organism
Phalaenopsis equestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family ARF
Protein Properties Length: 899aa    MW: 100157 Da    PI: 6.6704
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_03694genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B369.16e-22198299199
                 EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
          B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 
                 f+k+lt sd++++g +++ +++a+e+         ++  +++l+ +d++g +W++++i+r++++r++l++GW+ Fv +++L +gD ++F   +  ++el
  PEQU_03694 198 FCKTLTASDTSTHGGFSVLRRHADEClppldmaR-QP-PTQELVAKDLHGVEWRFRHIFRGQPRRHLLQSGWSVFVGSKRLVAGDAFIFL--RGANGEL 292
                 99*****************************743.33.3459************************************************..3489999 PP

                 EEEEE-S CS
          B3  93 vvkvfrk 99 
                 +v+v+r+
  PEQU_03694 293 RVGVRRA 299
                 ****996 PP
2Auxin_resp116.13e-38324406183
  Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                 a+ha+st+++F+v+Y+Pr+s+seF++++++++++lk++ s+GmRfkm+fe e+++e+r++Gt+v++ d+d+ +Wp+SkWr+Lk
  PEQU_03694 324 AWHAISTGTMFTVYYKPRTSPSEFIIPCNQYMESLKNNHSIGMRFKMSFECEEAPEQRFTGTIVDIGDVDSNSWPGSKWRCLK 406
                 89*******************************************************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019366.08E-41189327IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.108.4E-40192313IPR015300DNA-binding pseudobarrel domain
CDDcd100172.20E-20197298No hitNo description
SMARTSM010191.7E-21198300IPR003340B3 DNA binding domain
PROSITE profilePS5086311.42198300IPR003340B3 DNA binding domain
PfamPF023626.5E-20198299IPR003340B3 DNA binding domain
PfamPF065072.3E-35324406IPR010525Auxin response factor
SuperFamilySSF542771.03E-11766845No hitNo description
PROSITE profilePS5174524.01768850IPR000270PB1 domain
PfamPF023092.7E-8809856IPR033389AUX/IAA domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008285Biological Processnegative regulation of cell proliferation
GO:0009737Biological Processresponse to abscisic acid
GO:0009911Biological Processpositive regulation of flower development
GO:0010047Biological Processfruit dehiscence
GO:0010150Biological Processleaf senescence
GO:0010227Biological Processfloral organ abscission
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0048481Biological Processplant ovule development
GO:0005634Cellular Componentnucleus
GO:0005515Molecular Functionprotein binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 899 aa     Download sequence    Send to blast
MASSEASVKT SGANGHGDSL SSSCTDRLSI GKGTPTAISR RVGVGDLLLF LQVFAYKFCS  60
WFLVLLAEAE DLLYNELWHA CAGPLVSVPR VGERVFYFPQ GHIEQVEAST NQVADHQMPV  120
YNLPSKILCR VVNLELKGQV FYCFFVELIY ACTVGQAELD TDEVYAQITL FPEPNQDEQS  180
TEKEPLLPPP AKPPSYSFCK TLTASDTSTH GGFSVLRRHA DECLPPLDMA RQPPTQELVA  240
KDLHGVEWRF RHIFRGQPRR HLLQSGWSVF VGSKRLVAGD AFIFLRGANG ELRVGVRRAM  300
RQQTNVPSSV ISSHSMHLGV LATAWHAIST GTMFTVYYKP RTSPSEFIIP CNQYMESLKN  360
NHSIGMRFKM SFECEEAPEQ RFTGTIVDIG DVDSNSWPGS KWRCLKVRWD ENSSVPRPER  420
VSPWQIEPAM TPPVNPLPVP RPKRSRVNVI SSSPESSVLT REGTSKMAAE PSLIHGVAME  480
AQGNDFASMR NNFESNLSDP VLKSIVWPAN HIEEKHPICA QKIVGLDGWM QVGMHETSYT  540
DMLSGFQTSD DLHHFGLPYF EHTSADPKPP KSCLSGQKCE LNWLSGHLSL MPSHAYLNLE  600
RNMSANSTEL TNHRNQNIGF CRVEGHPVIQ LLGFERPQDC FTKRLKSPLA EKLLQTCSPK  660
SQPLKAALNE NENERAKEGC NYKLFGVDLN GSPTSEPVVP KVNLHQVQEV LSQPAVVGLP  720
HPYVFESDQH SEHSKGGKSS DTALAEKCHQ SQPAKDVQSK PPTTPSVRSC TKVHKQGIAL  780
GRSVDLARFS GYIELIAELD KMFEFGGELM SSNKNWMIVY TDNEGDMMLV GDDPWQEFCS  840
MVRKIYIYTK EEVQKMNPGT LNPIADDKLP FVKDNMAEME SKTSLSTSEA TAKSDKSFS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A1e-1667142817354Auxin response factor 1
4ldw_A1e-1667142817354Auxin response factor 1
4ldw_B1e-1667142817354Auxin response factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. Promotes flowering, stamen development, floral organ abscission and fruit dehiscence. Functions independently of ethylene and cytokinin response pathways. May act as a repressor of cell division and organ growth. {ECO:0000269|PubMed:12036261, ECO:0000269|PubMed:15960614, ECO:0000269|PubMed:16176952, ECO:0000269|PubMed:16339187}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00574DAPTransfer from AT5G62000Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020577783.10.0auxin response factor 2-like
RefseqXP_020577788.10.0auxin response factor 2-like
SwissprotQ94JM30.0ARFB_ARATH; Auxin response factor 2
TrEMBLA0A2I0VQA60.0A0A2I0VQA6_9ASPA; Auxin response factor
STRINGXP_010249208.10.0(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP117836111
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62000.30.0auxin response factor 2
Publications ? help Back to Top
  1. Chao WS,Doğramaci M,Foley ME,Horvath DP,Anderson JV
    Selection and validation of endogenous reference genes for qRT-PCR analysis in leafy spurge (Euphorbia esula).
    PLoS ONE, 2012. 7(8): p. e42839
    [PMID:22916167]
  2. Ozerova LV,Krasnikova MS,Troitsky AV,Solovyev AG,Morozov SY
    TAS3 Genes for small ta-siARF RNAs in plants belonging to subtribe Senecioninae: occurrence of prematurely terminated RNA precursors.
    Mol. Gen. Mikrobiol. Virusol., 2013.
    [PMID:24003511]
  3. Li C, et al.
    Ectopic expression of a maize hybrid down-regulated gene ZmARF25 decreases organ size by affecting cellular proliferation in Arabidopsis.
    PLoS ONE, 2014. 9(4): p. e94830
    [PMID:24756087]
  4. Lyons R, et al.
    Fusarium oxysporum triggers tissue-specific transcriptional reprogramming in Arabidopsis thaliana.
    PLoS ONE, 2015. 10(4): p. e0121902
    [PMID:25849296]
  5. Roodbarkelari F,Du F,Truernit E,Laux T
    ZLL/AGO10 maintains shoot meristem stem cells during Arabidopsis embryogenesis by down-regulating ARF2-mediated auxin response.
    BMC Biol., 2015. 13: p. 74
    [PMID:26358077]
  6. Meng LS,Wang ZB,Yao SQ,Liu A
    The ARF2-ANT-COR15A gene cascade regulates ABA-signaling-mediated resistance of large seeds to drought in Arabidopsis.
    J. Cell. Sci., 2015. 128(21): p. 3922-32
    [PMID:26395398]
  7. Zhao S,Zhang ML,Ma TL,Wang Y
    Phosphorylation of ARF2 Relieves Its Repression of Transcription of the K+ Transporter Gene HAK5 in Response to Low Potassium Stress.
    Plant Cell, 2016. 28(12): p. 3005-3019
    [PMID:27895227]
  8. Promchuea S,Zhu Y,Chen Z,Zhang J,Gong Z
    ARF2 coordinates with PLETHORAs and PINs to orchestrate ABA-mediated root meristem activity in Arabidopsis .
    J Integr Plant Biol, 2017. 59(1): p. 30-43
    [PMID:28074634]
  9. Wójcikowska B,Gaj MD
    Expression profiling of AUXIN RESPONSE FACTOR genes during somatic embryogenesis induction in Arabidopsis.
    Plant Cell Rep., 2017. 36(6): p. 843-858
    [PMID:28255787]
  10. Sanz-Fernández M, et al.
    Screening Arabidopsis mutants in genes useful for phytoremediation.
    J. Hazard. Mater., 2017. 335: p. 143-151
    [PMID:28441590]
  11. Zhang M,Hu X,Zhu M,Xu M,Wang L
    Transcription factors NF-YA2 and NF-YA10 regulate leaf growth via auxin signaling in Arabidopsis.
    Sci Rep, 2017. 7(1): p. 1395
    [PMID:28469131]
  12. Guan C, et al.
    Spatial Auxin Signaling Controls Leaf Flattening in Arabidopsis.
    Curr. Biol., 2017. 27(19): p. 2940-2950.e4
    [PMID:28943086]
  13. Liu Z, et al.
    ARF2-ARF4 and ARF5 are Essential for Female and Male Gametophyte Development in Arabidopsis.
    Plant Cell Physiol., 2018. 59(1): p. 179-189
    [PMID:29145642]
  14. Sarkar Das S, et al.
    Expression dynamics of miRNAs and their targets in seed germination conditions reveals miRNA-ta-siRNA crosstalk as regulator of seed germination.
    Sci Rep, 2018. 8(1): p. 1233
    [PMID:29352229]