PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PDK_30s741881g001

Organism

Phoenix dactylifera

Taxonomic ID

42345

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix

Family

Trihelix

Protein Properties

Length: 488aa MW: 53967.6 Da PI: 7.8665

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PDK_30s741881g001	genome	PDK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	105.8	3e-33	301	385	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 rW+k ev aLi++r+ +e+r+++ lk+plWeevs+ m++ g++rs+k+Ckekwen+nk+++k+ke+ kkr +++s+tcpyf+ql+ PDK_30s741881g001 301 RWPKPEVEALIQVRSGLESRFQEPGLKAPLWEEVSSTMAAMGYHRSAKRCKEKWENINKYFRKTKESGKKR-PRNSKTCPYFQQLD 385 8******************************************************************98.9999******98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50090	7.329	294	358	IPR017877	Myb-like domain
Pfam	PF13837	4.8E-24	300	387	No hit	No description
CDD	cd12203	1.74E-27	300	365	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 488 aa Download sequence Send to blast
RPLDIDYMSR NNKRCKEKEP ETSTNKYCKK SKEGAEPDHG GHITGGSNYK LFSELEAICK 60 PGGSTPGGGG GANQTGSGSA LTGDETALVH TATNPTGLAA DRHVGGSETS AGEEATVRKF 120 SKGSGRRNRK RGRQQKKQLS TIMAFFENLV KQLMDHQESL HRKFLEVMER RERERTVREE 180 AWRRQEAAKG GGKLIALRKR MYPSAALKPN FEEAAKSSRE AAARAQERAL ASSREAAIIS 240 FLEKTTGETV HFPEKLRFPS QFSEEPGKEA ETTENLPTEP SNNTIINGDG STNKIQLSTS 300 RWPKPEVEAL IQVRSGLESR FQEPGLKAPL WEEVSSTMAA MGYHRSAKRC KEKWENINKY 360 FRKTKESGKK RPRNSKTCPY FQQLDQLYSK SLTKSQPASS SSPNANAASC TASGTASDQR 420 KDNSELLDAI VVSTDQQGFK FPEMSSLHFD FNGKGDGDNE LPRNVGSNGE EEDDEDDEEG 480 EEREEGEG

Sequence ? help Back to Top

Protein Sequence Length: 488 aa Download sequence Send to blast

RPLDIDYMSR NNKRCKEKEP ETSTNKYCKK SKEGAEPDHG GHITGGSNYK LFSELEAICK  60
PGGSTPGGGG GANQTGSGSA LTGDETALVH TATNPTGLAA DRHVGGSETS AGEEATVRKF  120
SKGSGRRNRK RGRQQKKQLS TIMAFFENLV KQLMDHQESL HRKFLEVMER RERERTVREE  180
AWRRQEAAKG GGKLIALRKR MYPSAALKPN FEEAAKSSRE AAARAQERAL ASSREAAIIS  240
FLEKTTGETV HFPEKLRFPS QFSEEPGKEA ETTENLPTEP SNNTIINGDG STNKIQLSTS  300
RWPKPEVEAL IQVRSGLESR FQEPGLKAPL WEEVSSTMAA MGYHRSAKRC KEKWENINKY  360
FRKTKESGKK RPRNSKTCPY FQQLDQLYSK SLTKSQPASS SSPNANAASC TASGTASDQR  420
KDNSELLDAI VVSTDQQGFK FPEMSSLHFD FNGKGDGDNE LPRNVGSNGE EEDDEDDEEG  480
EEREEGEG

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00651	PBM	Transfer from LOC_Os02g01380	Download

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008794787.1	0.0	trihelix transcription factor GTL1-like
TrEMBL	A0A2H3Y811	0.0	A0A2H3Y811_PHODC; trihelix transcription factor GTL1-like
STRING	XP_008794787.1	0.0	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP6399	35	47

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76890.2	5e-39	Trihelix family protein