PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pbr035094.1

Organism

Pyrus bretschneideri

Taxonomic ID

225117

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus

Family

Nin-like

Protein Properties

Length: 989aa MW: 108143 Da PI: 5.6099

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pbr035094.1	genome	CPETR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	91	9e-29	588	639	1	52
RWP-RK 1 aekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 aek+isl++l++yF++++kdAAk+Lgvc+T++KriCR++GI+RWP+Rkik++ Pbr035094.1 588 AEKSISLQVLQQYFAGSLKDAAKSLGVCPTTMKRICRHHGISRWPSRKIKKV 639 589***********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.37	578	659	IPR003035	RWP-RK domain
Pfam	PF02042	3.1E-25	592	639	IPR003035	RWP-RK domain
SuperFamily	SSF54277	2.42E-21	887	981	No hit	No description
SMART	SM00666	3.7E-25	895	977	IPR000270	PB1 domain
PROSITE profile	PS51745	21.527	895	977	IPR000270	PB1 domain
Gene3D	G3DSA:3.10.20.240	7.6E-24	895	976	No hit	No description
CDD	cd06407	2.57E-33	896	976	No hit	No description
Pfam	PF00564	8.7E-19	896	976	IPR000270	PB1 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009414	Biological Process	response to water deprivation
GO:0010118	Biological Process	stomatal movement
GO:0010167	Biological Process	response to nitrate
GO:0042128	Biological Process	nitrate assimilation
GO:0005634	Cellular Component	nucleus
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 989 aa Download sequence Send to blast
MSDPEDKTQA PAIPPKPKNE REAALMDFDL DLDALWPLDP NHFLSNPTSP LLLPSNDQPC 60 TPLWAFPDGD VDGDDKLTGR VGQDLSDPSQ FVSCNSNSAT QGSTENKDNR LLPSLFSGLE 120 PVESSDGYSL FKEKITQALR YLKELTDQHV LAQVWVPVKD GNRYVLTTSG QPFVLDQHNI 180 GLHQYRMASL MYMFSVGGES DGMLGLPGRV FQHKLPEWTP NVQYYSIKEY PRLGHAQHYN 240 VQGTLALPVF EPSGRSCAGV LELIMTSPII NCGPEVDKVC KALEAVSLKS SEILDHPSRQ 300 IQICNEGRQT ALAEILKILT VVCETYKLPL AQTWVPCMHR SVLAYGGGLK KSCTSFDGSC 360 MEQVSMSTTD VAFYIIDAHM WRFRDACVEH HLQKGQGVAG RAFSSRNACF CGDITQFCKT 420 EYPLVHYARM FGLASSFAIC LQSTHTGNDD YILEFFLPPS ITDSHEQQTL LGSILAIMKN 480 DFRSLSVASG IVLEEEGIVE IVQVSTNNGL ATRLECILIP HSVESPPGPA LPNREEMVQL 540 DSSKQQLKEV YDVVNDGRNP VHEGGENNIS LPENKDIKKR PEKKRGKAEK SISLQVLQQY 600 FAGSLKDAAK SLGVCPTTMK RICRHHGISR WPSRKIKKVN RSLTKLQRVI DSVQGAEGAF 660 GLTPLTASPR PVAAGSISQP CNLNGSNKQG SPSSKPCEVS GEKKDSTTST SPGTEGQAGI 720 DNHLLDGWIL SHEELAPEHN TFLRDRGKGS NTSNTGSSSR EASAGTPTSH GSCQGSPGNG 780 IAVVNDPFVP FIHEQCIEVN GSPQSAVRTT EESNLLVACS IPDALLMAEP EEPCRGMLLG 840 DAGSSKDLRN LCPLADTIMD EQVREACNTN PPFLDSAPKQ SNTMPDIMGR QEMKSVIIKA 900 TYKEDIIRFR VSMSSGIVEL KEAVAKRLKL EVGTFDIKYV DDDLERVLVA CDADLQECME 960 VCRTSGSNMI RLSVHDIMSH LGSSCWNA*

Sequence ? help Back to Top

Protein Sequence Length: 989 aa Download sequence Send to blast

MSDPEDKTQA PAIPPKPKNE REAALMDFDL DLDALWPLDP NHFLSNPTSP LLLPSNDQPC  60
TPLWAFPDGD VDGDDKLTGR VGQDLSDPSQ FVSCNSNSAT QGSTENKDNR LLPSLFSGLE  120
PVESSDGYSL FKEKITQALR YLKELTDQHV LAQVWVPVKD GNRYVLTTSG QPFVLDQHNI  180
GLHQYRMASL MYMFSVGGES DGMLGLPGRV FQHKLPEWTP NVQYYSIKEY PRLGHAQHYN  240
VQGTLALPVF EPSGRSCAGV LELIMTSPII NCGPEVDKVC KALEAVSLKS SEILDHPSRQ  300
IQICNEGRQT ALAEILKILT VVCETYKLPL AQTWVPCMHR SVLAYGGGLK KSCTSFDGSC  360
MEQVSMSTTD VAFYIIDAHM WRFRDACVEH HLQKGQGVAG RAFSSRNACF CGDITQFCKT  420
EYPLVHYARM FGLASSFAIC LQSTHTGNDD YILEFFLPPS ITDSHEQQTL LGSILAIMKN  480
DFRSLSVASG IVLEEEGIVE IVQVSTNNGL ATRLECILIP HSVESPPGPA LPNREEMVQL  540
DSSKQQLKEV YDVVNDGRNP VHEGGENNIS LPENKDIKKR PEKKRGKAEK SISLQVLQQY  600
FAGSLKDAAK SLGVCPTTMK RICRHHGISR WPSRKIKKVN RSLTKLQRVI DSVQGAEGAF  660
GLTPLTASPR PVAAGSISQP CNLNGSNKQG SPSSKPCEVS GEKKDSTTST SPGTEGQAGI  720
DNHLLDGWIL SHEELAPEHN TFLRDRGKGS NTSNTGSSSR EASAGTPTSH GSCQGSPGNG  780
IAVVNDPFVP FIHEQCIEVN GSPQSAVRTT EESNLLVACS IPDALLMAEP EEPCRGMLLG  840
DAGSSKDLRN LCPLADTIMD EQVREACNTN PPFLDSAPKQ SNTMPDIMGR QEMKSVIIKA  900
TYKEDIIRFR VSMSSGIVEL KEAVAKRLKL EVGTFDIKYV DDDLERVLVA CDADLQECME  960
VCRTSGSNMI RLSVHDIMSH LGSSCWNA*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in regulation of nitrate assimilation and in transduction of the nitrate signal. {ECO:0000269\|PubMed:18826430}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00449	DAP	Transfer from AT4G24020	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pbr035094.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Not regulated by the N source or by nitrate. {ECO:0000269\|PubMed:18826430}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009358643.1	0.0	PREDICTED: protein NLP6-like
Swissprot	Q84TH9	0.0	NLP7_ARATH; Protein NLP7
TrEMBL	A0A498JL49	0.0	A0A498JL49_MALDO; Uncharacterized protein
STRING	XP_009358643.1	0.0	(Pyrus x bretschneideri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4257	34	56

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24020.1	0.0	NIN like protein 7

Publications ? help Back to Top
Xu N, et al. The Arabidopsis NRG2 Protein Mediates Nitrate Signaling and Interacts with and Regulates Key Nitrate Regulators. Plant Cell, 2016. 28(2): p. 485-504 [PMID:26744214] Karve R,Suárez-Román F,Iyer-Pascuzzi AS The Transcription Factor NIN-LIKE PROTEIN7 Controls Border-Like Cell Release. Plant Physiol., 2016. 171(3): p. 2101-11 [PMID:27221617] Yu LH, et al. Overexpression of Arabidopsis NLP7 improves plant growth under both nitrogen-limiting and -sufficient conditions by enhancing nitrogen and carbon assimilation. Sci Rep, 2016. 6: p. 27795 [PMID:27293103] Menz J,Li Z,Schulze WX,Ludewig U Early nitrogen-deprivation responses in Arabidopsis roots reveal distinct differences on transcriptome and (phospho-) proteome levels between nitrate and ammonium nutrition. Plant J., 2016. 88(5): p. 717-734 [PMID:27419465] Yan D, et al. NIN-like protein 8 is a master regulator of nitrate-promoted seed germination in Arabidopsis. Nat Commun, 2016. 7: p. 13179 [PMID:27731416] Guan P, et al. Interacting TCP and NLP transcription factors control plant responses to nitrate availability. Proc. Natl. Acad. Sci. U.S.A., 2017. 114(9): p. 2419-2424 [PMID:28202720] Liu KH, et al. Discovery of nitrate-CPK-NLP signalling in central nutrient-growth networks. Nature, 2017. 545(7654): p. 311-316 [PMID:28489820] Li Z, et al. The Arabidopsis CPSF30-L gene plays an essential role in nitrate signaling and regulates the nitrate transceptor gene NRT1.1. New Phytol., 2017. 216(4): p. 1205-1222 [PMID:28850721] Cao H, et al. Overexpression of the Maize ZmNLP6 and ZmNLP8 Can Complement the Arabidopsis Nitrate Regulatory Mutant nlp7 by Restoring Nitrate Signaling and Assimilation. Front Plant Sci, 2017. 8: p. 1703 [PMID:29051766] Konishi N,Okubo T,Yamaya T,Hayakawa T,Minamisawa K Nitrate Supply-Dependent Shifts in Communities of Root-Associated Bacteria in Arabidopsis. Microbes Environ., 2017. 32(4): p. 314-323 [PMID:29187692] Karve RA,Iyer-Pascuzzi AS Further insights into the role of NIN-LIKE PROTEIN 7 (NLP7) in root cap cell release. Plant Signal Behav, 2018. 13(1): p. e1414122 [PMID:29215953] Zhao L, et al. The Arabidopsis NLP7 gene regulates nitrate signaling via NRT1.1-dependent pathway in the presence of ammonium. Sci Rep, 2018. 8(1): p. 1487 [PMID:29367694]