PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr019826.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family TALE
Protein Properties Length: 569aa    MW: 63696.4 Da    PI: 6.9526
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr019826.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox25.71.9e-084875251854
                  HHHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
     Homeobox  18 lFek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                  +F++  ++yp+ +e+  LA k gLt +qV++WF N R +
  Pbr019826.1 487 MFQNflHPYPKDSEKHVLAVKSGLTRNQVSNWFINARVR 525
                  5787779******************************88 PP
2BELL66.74.7e-22362430271
         BELL   2 rqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeq 71 
                  +qe++ kk+kLl ll+ +d  Y+q+v++++tv+s+F+a+++ ++ ++++++ l++iS  +++L+++++ +
  Pbr019826.1 362 KQEIKTKKTKLLALLQTLDGCYNQCVDEIHTVVSAFHAATETDP-HLHARFVLQTISVLYKSLRERVSTH 430
                  589*****************************************.*********************9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005741.4E-23295429IPR006563POX domain
PfamPF075262.1E-24300427IPR006563POX domain
PROSITE profilePS5007111.013466529IPR001356Homeobox domain
CDDcd000868.18E-10469530No hitNo description
SMARTSM003892.6E-5469533IPR001356Homeobox domain
SuperFamilySSF466895.43E-15471538IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.1E-25472535IPR009057Homeodomain-like
PfamPF059201.7E-14486525IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008285Biological Processnegative regulation of cell proliferation
GO:0009640Biological Processphotomorphogenesis
GO:0010073Biological Processmeristem maintenance
GO:0010227Biological Processfloral organ abscission
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0010371Biological Processregulation of gibberellin biosynthetic process
GO:0090470Biological Processshoot organ boundary specification
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 569 aa     Download sequence    Send to blast
MMDNEMYNVP ADSQNSLVMD GVVPHTTVNS LVQSYSFDLN HQNRMMALPP VLSTFHGELV  60
MDSHSDLNNA NCVSVAESSP FLISQRGSNV RESSFVSSSF ADNTVFQATP HSSASLAALF  120
AARGSTFLQE NLNNLVISAM PFNSSEAYVL NDCSNNSNSL LAASVNCGYD EMLGSINRQW  180
EINKYAAPLE LGDGSSVRIG LQTYSSVGNV DPNGWLSSDG ASMMTYNSSS SSKFSNELAL  240
TLATSRPLEI RNQCSDVGSS GIAQPCLKQT RFTSPEQYSR NSEEFSLSYG SCKPPQLSQV  300
ICGSRYLHVV QEILSDIANY SLENLDQSSF SSARLVSERG MSAMDDDVDG RFEVPKEPAL  360
RKQEIKTKKT KLLALLQTLD GCYNQCVDEI HTVVSAFHAA TETDPHLHAR FVLQTISVLY  420
KSLRERVSTH FLLISENSSP ASPNESERSF EFHKQLALQH LKKKEHQIWR PQRGLPERSV  480
SVLRAWMFQN FLHPYPKDSE KHVLAVKSGL TRNQVSNWFI NARVRLWKPM IEEMYSEMNR  540
RKTRQNENLE RTHRSHHIRI NNHKFGVN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4xrm_A2e-14475533563Homeobox protein Meis2
4xrm_B2e-14475533563Homeobox protein Meis2
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor which may be involved in the signal transduction pathway downstream of the COP1 gene. Controls floral competency as a specific activator of FLC expression. Is responsive of the nuclear import of SHOOT MERISTEMLESS (STM). {ECO:0000269|PubMed:17908157}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr019826.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By light. In etiolated seedlings, maximally expressed after 3 days of illumination.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017184844.20.0homeobox protein ATH1-like
SwissprotP487311e-93ATH1_ARATH; Homeobox protein ATH1
TrEMBLA0A498HTP90.0A0A498HTP9_MALDO; Uncharacterized protein
STRINGXP_009365449.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF59393249
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32980.14e-78homeobox gene 1
Publications ? help Back to Top
  1. Khan M, et al.
    Repression of Lateral Organ Boundary Genes by PENNYWISE and POUND-FOOLISH Is Essential for Meristem Maintenance and Flowering in Arabidopsis.
    Plant Physiol., 2015. 169(3): p. 2166-86
    [PMID:26417006]