PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr009270.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family NAC
Protein Properties Length: 381aa    MW: 43519.9 Da    PI: 6.7897
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr009270.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM126.81.7e-3991311128
          NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kg 97 
                  lppG+rFhPt+eel+  yL +k+++ ++++ ++i++vdi+k+ePw+Lp+k+k +e+e+yfFs  d k++    ++ +t++gyW+atg+dk ++++ ++
  Pbr009270.1   9 LPPGLRFHPTEEELI-TYLMNKINDATFTV-RAIADVDINKCEPWELPAKAKMGENECYFFSLGDWKNS----TTLITNTGYWRATGRDKVIYNSvTS 100
                  79*************.9***********99.89***************99999***********99875....5678999*************99888 PP

          NAM  98 elvglkktLvfykgrapkgektdWvmheyrl 128
                  +  g++kt vfy gr p+g+k++W+mheyr+
  Pbr009270.1 101 KRAGMRKTRVFYIGRVPNGKKSNWIMHEYRI 131
                  99***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.79E-476152IPR003441NAC domain
PROSITE profilePS5100545.3619152IPR003441NAC domain
PfamPF023652.8E-2010131IPR003441NAC domain
SuperFamilySSF522007.46E-35219370IPR000157Toll/interleukin-1 receptor homology (TIR) domain
PROSITE profilePS5010423.924228370IPR000157Toll/interleukin-1 receptor homology (TIR) domain
Gene3DG3DSA:3.40.50.101408.2E-20228364IPR000157Toll/interleukin-1 receptor homology (TIR) domain
SMARTSM002551.3E-24229370IPR000157Toll/interleukin-1 receptor homology (TIR) domain
PfamPF015821.4E-35230366IPR000157Toll/interleukin-1 receptor homology (TIR) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007165Biological Processsignal transduction
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 381 aa     Download sequence    Send to blast
MTAEPKEELP PGLRFHPTEE ELITYLMNKI NDATFTVRAI ADVDINKCEP WELPAKAKMG  60
ENECYFFSLG DWKNSTTLIT NTGYWRATGR DKVIYNSVTS KRAGMRKTRV FYIGRVPNGK  120
KSNWIMHEYR IDSKSDFRTS KNEWVICRVF QKGKDINEYP TNQSRAANPH NLEIGPSMVP  180
SPLMQLGDPN HHQFPYGRNY MTSTALETSS SSSPCSSSSS SSSSSSSSPY DVFLSFNGED  240
TRKTFTDHLY WTMKDAGIDF FMEENESIRR GENMSDKVKQ IIEGSRVSVI VFSSRYADSI  300
WCLEELVHIV ECRRTLKQIV LPIFYDLSPS DAMGTFALAI QKHREHFNKD TDKEEKIQRW  360
TDALTEGADL TTWVFRTTNG *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A4e-40915217165NO APICAL MERISTEM PROTEIN
1ut4_B4e-40915217165NO APICAL MERISTEM PROTEIN
1ut7_A4e-40915217165NO APICAL MERISTEM PROTEIN
1ut7_B4e-40915217165NO APICAL MERISTEM PROTEIN
3swm_A5e-40915220168NAC domain-containing protein 19
3swm_B5e-40915220168NAC domain-containing protein 19
3swm_C5e-40915220168NAC domain-containing protein 19
3swm_D5e-40915220168NAC domain-containing protein 19
3swp_A5e-40915220168NAC domain-containing protein 19
3swp_B5e-40915220168NAC domain-containing protein 19
3swp_C5e-40915220168NAC domain-containing protein 19
3swp_D5e-40915220168NAC domain-containing protein 19
4dul_A4e-40915217165NAC domain-containing protein 19
4dul_B4e-40915217165NAC domain-containing protein 19
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr009270.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018505431.10.0PREDICTED: uncharacterized protein LOC103957566
RefseqXP_018505432.10.0PREDICTED: uncharacterized protein LOC103957566
TrEMBLA0A498HU041e-115A0A498HU04_MALDO; Uncharacterized protein
STRINGXP_009368024.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF50733253
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24430.23e-63NAC domain containing protein 38