PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pbr009223.1

Organism

Pyrus bretschneideri

Taxonomic ID

225117

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus

Family

CPP

Protein Properties

Length: 865aa MW: 93366.7 Da PI: 8.6479

Description

CPP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pbr009223.1	genome	CPETR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCR	43.7	5.5e-14	166	204	2	41
TCR 2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkee 41 ++k+CnCk+s+Clk+YCeCf ag +C+ C+C++C+N+ + Pbr009223.1 166 KQKQCNCKNSRCLKLYCECFTAGIYCEG-CNCSNCHNNVD 204 89***********************9.******986 PP
2	TCR	51.1	2.6e-16	250	289	1	40
TCR 1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 +++kgC+Ckks ClkkYCeCf+a+ Cse+CkC dCkN e Pbr009223.1 250 RHNKGCHCKKSGCLKKYCECFQANILCSENCKCMDCKNFE 289 589***********************************65 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM01114	1.4E-16	165	205	IPR033467	Tesmin/TSO1-like CXC domain
PROSITE profile	PS51634	37.024	166	290	IPR005172	CRC domain
Pfam	PF03638	5.5E-11	167	202	IPR005172	CRC domain
SMART	SM01114	5.7E-20	250	291	IPR033467	Tesmin/TSO1-like CXC domain
Pfam	PF03638	1.8E-12	253	288	IPR005172	CRC domain

Sequence ? help Back to Top
Protein Sequence Length: 865 aa Download sequence Send to blast
MRIWEANCAC WRLNLLEING AERNGLRSRA QEIGEAIGFH DAVSSVGECG GAGRTATATD 60 TVSGAAAATN LTGKTTVAFA FTVAAAGGGP FLEAVNAAAG GSAVSGSAAA PAGXXXXXXX 120 SAESRAVCKR SDSAPGAQAF ASEALIKQES PLSRQRGDGK DCTPKKQKQC NCKNSRCLKL 180 YCECFTAGIY CEGCNCSNCH NNVDNEAARQ DARGAILERN PNAFQPKIAS SPQESRDGRE 240 DAGEIQAAGR HNKGCHCKKS GCLKKYCECF QANILCSENC KCMDCKNFEG SEERRALYHE 300 GHNTVAYMQQ ANAAISGAIG TSGYGTPLVS RKRKGYELYF TTGNQSTHPI AQSQQENHLR 360 PPMTSSSQLS VPIFHAANAA VSRPSKTTTY RSPLADIIQP KNVKDLCSRL VVVAGAAAKA 420 LAGKXXXXXX XXXXXXXXER ETIDKTNATS STQEGNKHKM EHDKQHDDHI GVNQADRNAS 480 RFSGSNGGDV QDSRPMSPGT LALMCDEQDK MFMEAGLPNG AGTDNPSMPQ KSTQDIGFTE 540 VYVEQERLVL TGFRDCLNHL ITRGSIKETM CSPQGKRERV SQKESVQVGT AKPTTEPRYQ 600 KEAYSNGIVK SPLSSANGKI LQPVTTVTSG DNDLTLKGWN PGNLVEELEK ANPMKALFPE 660 AIPCHGKGSS VMRTHLLINA HQQPPHSPKT TLAHVSPPPS HTCLTVPPSP PKLSYNYRPK 720 SQARSSRSRL SDCDVSEMEE ARKLRSEFLK VLRSRRSGEV PMLVEPAKPV ANPLFQEANP 780 PSFSEVRIWF PFGNALYQFG RNLPSSTAFR SSDSAVLLFK PSFILMAVYR CHICSSKHKQ 840 YRNAVSSTAG NQPPNDPAHG NRGP*

Sequence ? help Back to Top

Protein Sequence Length: 865 aa Download sequence Send to blast

MRIWEANCAC WRLNLLEING AERNGLRSRA QEIGEAIGFH DAVSSVGECG GAGRTATATD  60
TVSGAAAATN LTGKTTVAFA FTVAAAGGGP FLEAVNAAAG GSAVSGSAAA PAGXXXXXXX  120
SAESRAVCKR SDSAPGAQAF ASEALIKQES PLSRQRGDGK DCTPKKQKQC NCKNSRCLKL  180
YCECFTAGIY CEGCNCSNCH NNVDNEAARQ DARGAILERN PNAFQPKIAS SPQESRDGRE  240
DAGEIQAAGR HNKGCHCKKS GCLKKYCECF QANILCSENC KCMDCKNFEG SEERRALYHE  300
GHNTVAYMQQ ANAAISGAIG TSGYGTPLVS RKRKGYELYF TTGNQSTHPI AQSQQENHLR  360
PPMTSSSQLS VPIFHAANAA VSRPSKTTTY RSPLADIIQP KNVKDLCSRL VVVAGAAAKA  420
LAGKXXXXXX XXXXXXXXER ETIDKTNATS STQEGNKHKM EHDKQHDDHI GVNQADRNAS  480
RFSGSNGGDV QDSRPMSPGT LALMCDEQDK MFMEAGLPNG AGTDNPSMPQ KSTQDIGFTE  540
VYVEQERLVL TGFRDCLNHL ITRGSIKETM CSPQGKRERV SQKESVQVGT AKPTTEPRYQ  600
KEAYSNGIVK SPLSSANGKI LQPVTTVTSG DNDLTLKGWN PGNLVEELEK ANPMKALFPE  660
AIPCHGKGSS VMRTHLLINA HQQPPHSPKT TLAHVSPPPS HTCLTVPPSP PKLSYNYRPK  720
SQARSSRSRL SDCDVSEMEE ARKLRSEFLK VLRSRRSGEV PMLVEPAKPV ANPLFQEANP  780
PSFSEVRIWF PFGNALYQFG RNLPSSTAFR SSDSAVLLFK PSFILMAVYR CHICSSKHKQ  840
YRNAVSSTAG NQPPNDPAHG NRGP*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5fd3_A	9e-29	167	299	11	132	Protein lin-54 homolog
5fd3_B	9e-29	167	299	11	132	Protein lin-54 homolog
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Plays a role in development of both male and female reproductive tissues. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pbr009223.1

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015035	2e-37	AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028949716.1	0.0	protein tesmin/TSO1-like CXC 5 isoform X1
Swissprot	Q9SZD1	1e-133	TCX5_ARATH; Protein tesmin/TSO1-like CXC 5
TrEMBL	A0A498HMG5	0.0	A0A498HMG5_MALDO; Uncharacterized protein
STRING	XP_008361154.1	0.0	(Malus domestica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2626	33	79

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G29000.1	1e-128	Tesmin/TSO1-like CXC domain-containing protein