PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr004388.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family CPP
Protein Properties Length: 706aa    MW: 76739.8 Da    PI: 6.7942
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr004388.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR25.52.6e-084524791441
          TCR  14 lkkYCeCfaagkkCseeCkCedCkNkee 41 
                  +k YC+Cfaag +C e C+C++C+Nk +
  Pbr004388.1 452 KKSYCDCFAAGLYCIEPCSCQECFNKPN 479
                  69***********************975 PP
2TCR51.22.5e-16525564140
          TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                  ++k+gCnC+ks+ClkkYCeCf+ g+ C+  C+C +CkN+ 
  Pbr004388.1 525 RHKRGCNCRKSSCLKKYCECFQGGAGCGILCRCVGCKNTF 564
                  589***********************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011143.0E-4442480IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163429.884443565IPR005172CRC domain
PfamPF036383.9E-5452477IPR005172CRC domain
SMARTSM011149.6E-17525566IPR033467Tesmin/TSO1-like CXC domain
PfamPF036381.1E-11527563IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 706 aa     Download sequence    Send to blast
MDTPLKNQIT PTTPLPAKYE DSPVFNYISN LSPIEPVNSA GNDHHTFNSL AFASLPSIFA  60
SPQNLSVPET RFLLRRQHFS DSPKPESFQS GNRNSKSDGV PVSVEQAYLG SDQPECFASG  120
SSSDVEVASA VPTENLEPPV EFLNTLKYSS GSPHRNDVHH SKGRHLLFER DTHLRRILRV  180
EQKKDAAACD LVRLISDDQL KFDLTTIKEN CARHDPKPVD PGEISFMSNI LRDNDIEVEE  240
SAGPIDSSEE SELGKVSNQP EGIRGTKETD QAPAILSGTL LDKLNVNDPS GIVDKKSLNC  300
IHSSCKPSSQ SYAIRRRCLD FERPAAHQRK SIDASGGSLA LPQSSCEVTS VENQLVQTIK  360
GCDYSSSRLP GIGLHLNALA TSSESNLSKV VKHDISESRA TNFPNSKISS TCLTPSEVSR  420
DESCKNKAQV AETPPQVCAA VGQEHDCNSP EKKSYCDCFA AGLYCIEPCS CQECFNKPNY  480
ENIVLENRKL IESRNPLAFA PKVTASAVAI PQHGEETNST PSSARHKRGC NCRKSSCLKK  540
YCECFQGGAG CGILCRCVGC KNTFGRKDES KQAEVGGDES VVPNMDALNV SLPTVRDQDL  600
PMARSGIFRL PRDQLTSSSN EKQKIFSLHS VVSSPQLEKD LQAIPENGTL ETLASSGSHK  660
STSPNSKRVS PPHSGSEFGS AWRGGRKLVL RSIPPFPTLE SPQKQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A9e-1245356223120Protein lin-54 homolog
5fd3_B9e-1245356223120Protein lin-54 homolog
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr004388.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009364529.20.0PREDICTED: protein tesmin/TSO1-like CXC 3
TrEMBLA0A498ILT20.0A0A498ILT2_MALDO; Uncharacterized protein
STRINGXP_009364529.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF26193375
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22780.12e-72Tesmin/TSO1-like CXC domain-containing protein