PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pbr001302.1

Organism

Pyrus bretschneideri

Taxonomic ID

225117

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus

Family

Nin-like

Protein Properties

Length: 855aa MW: 94798.2 Da PI: 6.5791

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pbr001302.1	genome	CPETR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	91.5	6.2e-29	588	639	1	52
RWP-RK 1 aekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 aek+isle+l++yF++++kdAAk+Lgvc+T++KriCR++GI+RWP+Rkik++ Pbr001302.1 588 AEKSISLEVLQQYFAGSLKDAAKSLGVCPTTMKRICRHHGISRWPSRKIKKI 639 589***********************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	16.642	578	659	IPR003035	RWP-RK domain
Pfam	PF02042	1.6E-25	592	639	IPR003035	RWP-RK domain
SuperFamily	SSF54277	2.16E-13	753	847	No hit	No description
SMART	SM00666	1.5E-17	761	843	IPR000270	PB1 domain
PROSITE profile	PS51745	14.86	761	843	IPR000270	PB1 domain
Gene3D	G3DSA:3.10.20.240	4.8E-15	761	842	No hit	No description
Pfam	PF00564	4.0E-11	762	841	IPR000270	PB1 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 855 aa Download sequence Send to blast
MSDREYETQT PSTPPNLKNE REDALMDFDF DLDVLCTLDP IHFLSYPTSP LLLPPNDQPC 60 TPLWAFSDGD VESDYKLAGH AGQALSDRSQ FVSCNSNSVT EGSTETKDNR MLPSPFSGLE 120 PLESSDGYSL VNEKITQALR YLKELTDQPV LAQFWAPVKD GNRYVLTTLG QPFVLDPQCI 180 RLHQYRMACL MYMFSVDGES DGVLGLPGRV FQHKLPEWTP NVQYYSIKEY ARLHHARQYN 240 VQGTLALPVF EPSGRSCVGV LELIMISPLI NYGPEVDKVC KALEAVSLKS SEILDHPSRQ 300 IQICNKGRRT ALAEILNILI VVSETHKLPL AQTWVPCMHR NVLAYGGGLQ KSCTSFDGSC 360 MQQVCMSTTD VAFYIVDAHM WHFRDACVEH HLQKGQGVAG RAFLSHNACF CEDITQFCKT 420 EYPLAHYARM FGLAGSFAIC LQSTHTGNDD YILEFFLPPS ITDSHEQQTL LGSILAIMKN 480 HFRSLSVASG IVLEEEGIVE IVQASKNNGL ATRLQCILIP RSVESPPVPA LPNREEMVQL 540 DSSKPQLVVG YDVVNDGRNY VHEGGENNIS FPENKDIKKK PEKKHGKAEK SISLEVLQQY 600 FAGSLKDAAK SLGVCPTTMK RICRHHGISR WPSRKIKKIN HSLTKLQCII ESVHGAAFGL 660 TPLTASSPSS KPCEVDGQKK DSPTSTSPGT EGRAGIDNHL LDGRMLSYEE LLLEHNSSTC 720 HGSCQGSPGN RIAMANPPFS DSAPKQSNTM PHITGRQEMK SVTIKATYKE YIIRFHVPMS 780 SGIVDTKEEV AKKLKLEGGT FDIKCVAYDL ERVPVPCDAD LQECLEVCRT SRINLIRLSI 840 HEIMSHVGSS CVRF*

Sequence ? help Back to Top

Protein Sequence Length: 855 aa Download sequence Send to blast

MSDREYETQT PSTPPNLKNE REDALMDFDF DLDVLCTLDP IHFLSYPTSP LLLPPNDQPC  60
TPLWAFSDGD VESDYKLAGH AGQALSDRSQ FVSCNSNSVT EGSTETKDNR MLPSPFSGLE  120
PLESSDGYSL VNEKITQALR YLKELTDQPV LAQFWAPVKD GNRYVLTTLG QPFVLDPQCI  180
RLHQYRMACL MYMFSVDGES DGVLGLPGRV FQHKLPEWTP NVQYYSIKEY ARLHHARQYN  240
VQGTLALPVF EPSGRSCVGV LELIMISPLI NYGPEVDKVC KALEAVSLKS SEILDHPSRQ  300
IQICNKGRRT ALAEILNILI VVSETHKLPL AQTWVPCMHR NVLAYGGGLQ KSCTSFDGSC  360
MQQVCMSTTD VAFYIVDAHM WHFRDACVEH HLQKGQGVAG RAFLSHNACF CEDITQFCKT  420
EYPLAHYARM FGLAGSFAIC LQSTHTGNDD YILEFFLPPS ITDSHEQQTL LGSILAIMKN  480
HFRSLSVASG IVLEEEGIVE IVQASKNNGL ATRLQCILIP RSVESPPVPA LPNREEMVQL  540
DSSKPQLVVG YDVVNDGRNY VHEGGENNIS FPENKDIKKK PEKKHGKAEK SISLEVLQQY  600
FAGSLKDAAK SLGVCPTTMK RICRHHGISR WPSRKIKKIN HSLTKLQCII ESVHGAAFGL  660
TPLTASSPSS KPCEVDGQKK DSPTSTSPGT EGRAGIDNHL LDGRMLSYEE LLLEHNSSTC  720
HGSCQGSPGN RIAMANPPFS DSAPKQSNTM PHITGRQEMK SVTIKATYKE YIIRFHVPMS  780
SGIVDTKEEV AKKLKLEGGT FDIKCVAYDL ERVPVPCDAD LQECLEVCRT SRINLIRLSI  840
HEIMSHVGSS CVRF*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pbr001302.1

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017180542.1	0.0	protein NLP6-like isoform X1
Swissprot	Q8RWY4	0.0	NLP6_ARATH; Protein NLP6
TrEMBL	A0A498I7W7	0.0	A0A498I7W7_MALDO; Uncharacterized protein
STRING	XP_009347913.1	0.0	(Pyrus x bretschneideri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4257	34	56

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G64530.1	0.0	Nin-like family protein

Publications ? help Back to Top
Liseron-Monfils C, et al. Nitrogen transporter and assimilation genes exhibit developmental stage-selective expression in maize (Zea mays L.) associated with distinct cis-acting promoter motifs. Plant Signal Behav, 2014. [PMID:24270626] Guan P, et al. Interacting TCP and NLP transcription factors control plant responses to nitrate availability. Proc. Natl. Acad. Sci. U.S.A., 2017. 114(9): p. 2419-2424 [PMID:28202720] Guan P Dancing with Hormones: A Current Perspective of Nitrate Signaling and Regulation in Arabidopsis. Front Plant Sci, 2017. 8: p. 1697 [PMID:29033968]