PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr000957.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family CPP
Protein Properties Length: 914aa    MW: 99712.5 Da    PI: 7.0935
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr000957.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR48.91.3e-15472508339
          TCR   3 kkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 
                  +k+CnCkk+kClk+YC+Cfaag++C+e+C C++C+N 
  Pbr000957.1 472 CKRCNCKKTKCLKLYCDCFAAGVYCAETCACQGCFNI 508
                  79**********************************6 PP
2TCR50.34.7e-16549587139
          TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 
                  ++k+gCnCkks ClkkYCeC++a++ Cs+ C+C++CkN 
  Pbr000957.1 549 RHKRGCNCKKSMCLKKYCECYQANVGCSSGCRCDGCKNV 587
                  589***********************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011148.4E-15470511IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163435.028471589IPR005172CRC domain
PfamPF036382.6E-11473507IPR005172CRC domain
SMARTSM011146.8E-17549590IPR033467Tesmin/TSO1-like CXC domain
PfamPF036382.4E-11551586IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 914 aa     Download sequence    Send to blast
MDSPEIPKIM SNTSPSSDSP PVQESPVFSY ISNLSPIQPV KASHAAQGFP GLSSPPLVFT  60
SPRVNTLRET SFLKRPQYPQ LASAEKPKAQ DEAKKFVDGP VDSKKHINQL QMGSITDTQD  120
CETNSSSEGV DEYLADPMEM DGTNSAQSVN PCLKESKNFY KSEEPSEQAT EDLQGKQTFD  180
AKPVKIKELG HGALPSSEHP KVGSRISVDN AFNGEYHHGL HNQGFRGEHQ DDCDHTCQSP  240
PGRLQIGQVY EDCKENVGGT SKGMVGNMIL HAPNKVKNDQ GGMHRRCLQF EEAPPCATGK  300
RDSSSTEKVN NSEPPASTAE LEIVKVSYAA TSKRQMGASL PPLYGGSSPL TVPKPSGIGL  360
HLNSIVNAVP VVRGATTSIK LADHYIGLQV MKSSAVVSHL LLENVRDNTE TSIAASSSIN  420
QSPHTVEFEH HGSPLEERKS DSQNVDSYKE LNQYSSQKKR KRTPSSKDSD GCKRCNCKKT  480
KCLKLYCDCF AAGVYCAETC ACQGCFNIPD YEDTVLETRQ QIEARNPFAF APKIVQLEEE  540
IQFTPASARH KRGCNCKKSM CLKKYCECYQ ANVGCSSGCR CDGCKNVYGR KGDYGPIDHG  600
VTKDMISDKA GKETFDEKLE MVATKKDALS IELYDSHNHT PLTPSIQCSD HADNVPKSPC  660
LITSYLRSPE SDLTVISSYE KSTISSLRNS ETSRILLETS KELSDMGYYC WQEDYDNIGI  720
ADTFSPRHDX XXXXXXXXXX XHDAAPTICH ITPLSDLCSK ASASSTSSRS HWKNASQIQL  780
CPGSQGLSSN SSLRWCSSPL TPMTRLGGTE CSQGLDFDHG LSDVMQEEMP EILKDISATN  840
KSVKVSSPNK KRVSPPHNHN HELGASSSGS LRSGRKFILK AVPSFPPLTP CSSSKGSNTI  900
QSTGNLHDKG RKK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A3e-1947558714121Protein lin-54 homolog
5fd3_B3e-1947558714121Protein lin-54 homolog
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1457462KKRKRT
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr000957.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009347636.10.0PREDICTED: protein tesmin/TSO1-like CXC 2 isoform X1
TrEMBLA0A498J9900.0A0A498J990_MALDO; Uncharacterized protein
STRINGXP_009347635.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF85652841
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22780.13e-62Tesmin/TSO1-like CXC domain-containing protein