PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00848g00319.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family MIKC_MADS
Protein Properties Length: 338aa    MW: 38815.4 Da    PI: 5.0138
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00848g00319.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF901.2e-28958150
                              S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
                    SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                              k+ien++nrqvtfskRrng++KKA+ELSvLCd++va+i+fs++g++ ++s
  Peaxi162Scf00848g00319.1  9 KKIENTTNRQVTFSKRRNGLIKKAYELSVLCDVDVALIMFSPSGRVSTFS 58
                              68***********************************************8 PP
2K-box21.21.2e-08102184184
                     K-box   1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkke 84 
                               yq+ss+ +  +++ e+ qqe+ + k ++e ++r++R + G+  e  s+ e q  e+ L++ lk++ ++K ++l e+ +  q++ 
  Peaxi162Scf00848g00319.1 102 YQASSSPASVDSQIEEFQQEILRYKTQLEDMERQLRMYEGDMCEITSVCEAQYREEILQETLKQVQARK-QVLEENYNSPQEQT 184
                               6777788889999******************************************************99.56666666555554 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006629.857161IPR002100Transcription factor, MADS-box
SMARTSM004323.5E-38160IPR002100Transcription factor, MADS-box
CDDcd002651.11E-38275No hitNo description
SuperFamilySSF554551.96E-30282IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004041.4E-25323IPR002100Transcription factor, MADS-box
PfamPF003197.0E-271057IPR002100Transcription factor, MADS-box
PRINTSPR004041.4E-252338IPR002100Transcription factor, MADS-box
PRINTSPR004041.4E-253859IPR002100Transcription factor, MADS-box
Gene3DG3DSA:1.20.1170.101.6E-484189No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010152Biological Processpollen maturation
GO:0080092Biological Processregulation of pollen tube growth
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 338 aa     Download sequence    Send to blast
MGRVKLQIKK IENTTNRQVT FSKRRNGLIK KAYELSVLCD VDVALIMFSP SGRVSTFSGN  60
KSIEDVMARY VNLPEHDRGR LHNQEHLQRA LAKLKSETDR TYQASSSPAS VDSQIEEFQQ  120
EILRYKTQLE DMERQLRMYE GDMCEITSVC EAQYREEILQ ETLKQVQARK QVLEENYNSP  180
QEQTTTQQQM DFPAQNVNVV NNVATSDSIT NTSNTFMDWV PHSQRDPHVQ ILNFLDSNGL  240
LPFRDEADQR MDNMLPPTLT QLHNPNVSAV ADHLSPNNRF ENDPPRPTSF EGIIDVNNAP  300
WPPLYPTGND PFPVSQPRER AMLELFLSQL TPVNQDHI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P1e-15189190Myocyte-specific enhancer factor 2B
1tqe_Q1e-15189190Myocyte-specific enhancer factor 2B
1tqe_R1e-15189190Myocyte-specific enhancer factor 2B
1tqe_S1e-15189190Myocyte-specific enhancer factor 2B
3mu6_A1e-15270168Myocyte-specific enhancer factor 2A
3mu6_B1e-15270168Myocyte-specific enhancer factor 2A
3mu6_C1e-15270168Myocyte-specific enhancer factor 2A
3mu6_D1e-15270168Myocyte-specific enhancer factor 2A
6c9l_A1e-15189190Myocyte-specific enhancer factor 2B
6c9l_B1e-15189190Myocyte-specific enhancer factor 2B
6c9l_C1e-15189190Myocyte-specific enhancer factor 2B
6c9l_D1e-15189190Myocyte-specific enhancer factor 2B
6c9l_E1e-15189190Myocyte-specific enhancer factor 2B
6c9l_F1e-15189190Myocyte-specific enhancer factor 2B
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754431e-76HG975443.1 Solanum pennellii chromosome ch04, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019262549.10.0PREDICTED: agamous-like MADS-box protein AGL104
TrEMBLA0A314L9F10.0A0A314L9F1_NICAT; Agamous-like mads-box protein agl104
STRINGXP_009790826.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA61831925
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22130.12e-56AGAMOUS-like 104