PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peaxi162Scf00807g00004.1

Organism

Petunia axillaris

Taxonomic ID

33119

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia

Family

WRKY

Protein Properties

Length: 284aa MW: 31814.3 Da PI: 7.7988

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peaxi162Scf00807g00004.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	102.9	1.8e-32	183	240	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 +Dgy+WrKYGqK vk+s fpr+YYrCt+++C+vkk+vers edp++v++tYeg+Hnh+ Peaxi162Scf00807g00004.1 183 EDGYRWRKYGQKAVKNSSFPRNYYRCTTQKCSVKKRVERSYEDPSIVITTYEGQHNHH 240 8********************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	6.8E-34	167	242	IPR003657	WRKY domain
SuperFamily	SSF118290	8.5E-29	174	242	IPR003657	WRKY domain
PROSITE profile	PS50811	30.377	177	242	IPR003657	WRKY domain
SMART	SM00774	2.2E-37	182	241	IPR003657	WRKY domain
Pfam	PF03106	1.3E-25	183	240	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 284 aa Download sequence Send to blast
MSDNPFYHDY MGTGGINTYP FFGENFSNYE QPPPNIQNPQ HFVPSSYMTL TECLQHGCVD 60 YNNLSSAFGM SCSSSEVVHP QVDQDTSMKS SVSAGESALS YPLGGTGVEI PRTPNSSISS 120 TSNEAGGEED SSKSKKHFQR SKECQGEGDG VSKEVSKAKK KGEKKQKEPR FAFMTKSEVD 180 NLEDGYRWRK YGQKAVKNSS FPRNYYRCTT QKCSVKKRVE RSYEDPSIVI TTYEGQHNHH 240 CPATLRSNML SPSFLSSSMP SQLMPNFPRE LFAQMLPTSN YQNL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	1e-27	172	243	7	78	Probable WRKY transcription factor 4
2lex_A	1e-27	172	243	7	78	Probable WRKY transcription factor 4
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009766292.1	1e-144	PREDICTED: probable WRKY transcription factor 71
Refseq	XP_016432826.1	1e-144	PREDICTED: probable WRKY transcription factor 71
TrEMBL	A0A1S3WZ64	1e-142	A0A1S3WZ64_TOBAC; probable WRKY transcription factor 71
TrEMBL	A0A1U7VE17	1e-142	A0A1U7VE17_NICSY; probable WRKY transcription factor 71
STRING	XP_009766292.1	1e-143	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1485	24	75

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G18170.1	6e-52	WRKY DNA-binding protein 28