PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00591g00074.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family MIKC_MADS
Protein Properties Length: 169aa    MW: 19646.6 Da    PI: 9.3539
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00591g00074.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF92.12.7e-29959151
                              S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                    SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                              krien+snrqvt+skRrngi+KKA+E+ vLCda+v++iif+++gk++ey+s
  Peaxi162Scf00591g00074.1  9 KRIENSSNRQVTYSKRRNGIIKKAKEITVLCDAKVSLIIFGNSGKMHEYCS 59
                              79***********************************************96 PP
2K-box49.51.9e-17631263699
                     K-box  36 RhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 
                                hl+Ged++sL++keL+ Le+ L ++l++i +k++e+l++  ++ q  e+e+++ + aL++k +
  Peaxi162Scf00591g00074.1  63 THLKGEDINSLNHKELMVLEEGLTNGLSSISAKQSEILRMVRKNDQILEEEHKQLQYALHQKEM 126
                               69***********************************************************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004326.3E-40160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006632.296161IPR002100Transcription factor, MADS-box
CDDcd002653.14E-37262No hitNo description
SuperFamilySSF554552.09E-30268IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004041.3E-28323IPR002100Transcription factor, MADS-box
PfamPF003196.7E-231057IPR002100Transcription factor, MADS-box
PRINTSPR004041.3E-282338IPR002100Transcription factor, MADS-box
PRINTSPR004041.3E-283859IPR002100Transcription factor, MADS-box
PROSITE profilePS512978.48341127IPR002487Transcription factor, K-box
PfamPF014863.9E-1061120IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 169 aa     Download sequence    Send to blast
MGRGKIEIKR IENSSNRQVT YSKRRNGIIK KAKEITVLCD AKVSLIIFGN SGKMHEYCSP  60
STTHLKGEDI NSLNHKELMV LEEGLTNGLS SISAKQSEIL RMVRKNDQIL EEEHKQLQYA  120
LHQKEMAAMG GNMRMIEEVY HQRDRDYEYQ QMPFALRVQP MQPNLHERM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A9e-17160160MEF2 CHIMERA
6byy_B9e-17160160MEF2 CHIMERA
6byy_C9e-17160160MEF2 CHIMERA
6byy_D9e-17160160MEF2 CHIMERA
6bz1_A9e-17160160MEF2 CHIMERA
6bz1_B9e-17160160MEF2 CHIMERA
6bz1_C9e-17160160MEF2 CHIMERA
6bz1_D9e-17160160MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in the genetic control of flower development.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankX699471e-180X69947.1 P.hybrida mRNA for pmads 2.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019258175.11e-108PREDICTED: floral homeotic protein PMADS 2
SwissprotQ074741e-116MADS2_PETHY; Floral homeotic protein PMADS 2
TrEMBLQ408831e-113Q40883_PETHY; FBP3
STRINGXP_009608638.11e-107(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA46802139
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G20240.12e-51MIKC_MADS family protein
Publications ? help Back to Top
  1. Immink RG, et al.
    Analysis of the petunia MADS-box transcription factor family.
    Mol. Genet. Genomics, 2003. 268(5): p. 598-606
    [PMID:12589434]
  2. Kush A,Brunelle A,Shevell D,Chua NH
    The cDNA sequence of two MADS box proteins in Petunia.
    Plant Physiol., 1993. 102(3): p. 1051-2
    [PMID:8278527]