PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peaxi162Scf00367g00082.1

Organism

Petunia axillaris

Taxonomic ID

33119

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia

Family

TCP

Protein Properties

Length: 383aa MW: 43907.6 Da PI: 6.7961

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peaxi162Scf00367g00082.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	131.1	1e-40	118	249	2	136
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnss 86 +gkkdrhski+T++g RdRR+Rls+++a++fFdLqd+LGfdk+sktieWL+ +++ aikel + s+ +++c+++ss+ ++ ++s Peaxi162Scf00367g00082.1 118 TGKKDRHSKICTAQGVRDRRMRLSLQIARKFFDLQDMLGFDKASKTIEWLFSKSNNAIKELLANISQENNSCNSNSSNDQGRKES 202 79**************************************************************999999995555555544222 PP TCP 87 sgkaaksaakskksqksaasalnlakesrakarararertrekmriknkl 136 + + +s+ +++k++ + + ++n k ++ a+ e+++ekm+ik ++ Peaxi162Scf00367g00082.1 203 K-FEVPSSLEKSKNEVKVKDHRNSRKMES--IGAKGMESNKEKMMIKRHK 249 2.233333333344444444444444333..3344558899999998665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	5.9E-38	118	242	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	36.564	120	178	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 383 aa Download sequence Send to blast
MFPKSNINDL FPYNEDELLK QSFTYDYHQN PNSTSRVELD HPFFSHFPSP FLDVQEYPLS 60 QIFSQELDAS HDHDIEADLD ISGSMEDQSS NPGKEIPPEP ASPSSKKRKL SAKPRRRTGK 120 KDRHSKICTA QGVRDRRMRL SLQIARKFFD LQDMLGFDKA SKTIEWLFSK SNNAIKELLA 180 NISQENNSCN SNSSNDQGRK ESKFEVPSSL EKSKNEVKVK DHRNSRKMES IGAKGMESNK 240 EKMMIKRHKK GKELYQITNP NNVESNIFCN KDTTQEKSTS PHEANSQTLE HQFANVGIME 300 SYLGGTSSSL TSIFDNHENN IEVRGRDNYD NCFMSYLENW DIKNTSSSSY CSTTMTNEIQ 360 IPFAGNLSSI YLDNSRFQFQ HLD

Sequence ? help Back to Top

Protein Sequence Length: 383 aa Download sequence Send to blast

MFPKSNINDL FPYNEDELLK QSFTYDYHQN PNSTSRVELD HPFFSHFPSP FLDVQEYPLS  60
QIFSQELDAS HDHDIEADLD ISGSMEDQSS NPGKEIPPEP ASPSSKKRKL SAKPRRRTGK  120
KDRHSKICTA QGVRDRRMRL SLQIARKFFD LQDMLGFDKA SKTIEWLFSK SNNAIKELLA  180
NISQENNSCN SNSSNDQGRK ESKFEVPSSL EKSKNEVKVK DHRNSRKMES IGAKGMESNK  240
EKMMIKRHKK GKELYQITNP NNVESNIFCN KDTTQEKSTS PHEANSQTLE HQFANVGIME  300
SYLGGTSSSL TSIFDNHENN IEVRGRDNYD NCFMSYLENW DIKNTSSSSY CSTTMTNEIQ  360
IPFAGNLSSI YLDNSRFQFQ HLD

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	106	116	KRKLSAKPRRR

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KR002104	0.0	KR002104.1 Petunia x hybrida TCP transcription factor 2 (TCP2) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016450579.1	1e-140	PREDICTED: transcription factor TCP12-like
TrEMBL	A0A0H4UQT6	0.0	A0A0H4UQT6_PETHY; TCP transcription factor 2
STRING	XP_009601065.1	1e-139	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2436	23	59

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68800.1	2e-31	TCP domain protein 12