PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00220g00025.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family MYB
Protein Properties Length: 650aa    MW: 74032.5 Da    PI: 9.0349
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00220g00025.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding21.45.7e-07462503240
                               SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHH CS
           Myb_DNA-binding   2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqc 40 
                               ++W++eE +ll ++  ++++g   +W+ I++++g++Rt +++
  Peaxi162Scf00220g00025.1 462 KPWSKEEIDLLRKGMLKYPKGtsrRWEVISEYIGTRRTVEEI 503
                               69********************************99998775 PP
2Myb_DNA-binding27.85.8e-09594637445
                               S-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS
           Myb_DNA-binding   4 WTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45 
                               W++  ++ lv+a k ++++   +W+++a  ++ g+t +qck ++ 
  Peaxi162Scf00220g00025.1 594 WSAVQEKALVQALKTFPKEtsqRWERVATAVP-GKTMNQCKKKFA 637
                               ********************************.********9985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF465659.68E-2168175IPR001623DnaJ domain
PRINTSPR006252.1E-78199IPR001623DnaJ domain
Gene3DG3DSA:1.10.287.1102.7E-2094196IPR001623DnaJ domain
SMARTSM002712.1E-1696171IPR001623DnaJ domain
CDDcd062573.18E-1397168IPR001623DnaJ domain
PfamPF002261.4E-1697176IPR001623DnaJ domain
PROSITE profilePS5007618.39597179IPR001623DnaJ domain
PRINTSPR006252.1E-7120135IPR001623DnaJ domain
PRINTSPR006252.1E-7151171IPR001623DnaJ domain
PROSITE patternPS006360156175IPR018253DnaJ domain, conserved site
Gene3DG3DSA:1.10.10.601.6E-4457503IPR009057Homeodomain-like
PROSITE profilePS512936.695459514IPR017884SANT domain
SMARTSM007173.3E-5460513IPR001005SANT/Myb domain
SuperFamilySSF466893.89E-7462505IPR009057Homeodomain-like
PfamPF002496.6E-6462502IPR001005SANT/Myb domain
CDDcd001673.40E-4463503No hitNo description
PROSITE profilePS512939.098589644IPR017884SANT domain
SMARTSM007173.0E-8590642IPR001005SANT/Myb domain
SuperFamilySSF466892.02E-9592647IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.8E-5594636IPR009057Homeodomain-like
PfamPF002492.9E-7594636IPR001005SANT/Myb domain
CDDcd001676.64E-6594640No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 650 aa     Download sequence    Send to blast
MASRSRVRLI SYSEEIINGE PIYISSNCCP IKAHKYEPAG LAFHSAALRL IGHVEKEDTK  60
DSKENVPNDK EQAYTYSSES YSSKGKKKSS TGEKIQDHYA LLGLSHLRYL ASEDQIRKSY  120
RDAALRHHPD KLASLLLAEE TEAAKQAKKE EIENHFKAIQ EAYEVLIDPV RRRIYDSTDE  180
FDDEIPAECA PQDFFKVFGP AFLRNGRWSV TQPVPSLGDE NTPLKEVDNF YNFWYGFKSW  240
REFPHADEFD VEQAESRDHK RWMERQNAKL SEKARKEEAV RVRSLVDNAY KKDPRILGRK  300
EAEKAEKQRK KEAKVLAKKL KEEEAARIAE EEKRKKEEEE RKAAEAASQQ KKVKEKEKKL  360
LRKERSRLRT LAAPVLSQHL LGITEDDVEG LCMSLDIEQL RNLCDKAGGK SELEMAELLR  420
EALGHEHDLK YENKDGVSKS QQNGSLEGKK QVPLMSSEKR EKPWSKEEID LLRKGMLKYP  480
KGTSRRWEVI SEYIGTRRTV EEILKATKTV LLQKPDSAKA FDSFLEKRKP APTIASPLST  540
RAEVEGVENS SKPESGSVKL ADSQESPSQN TNSQNTEDAP AANGVSSSSD SDIWSAVQEK  600
ALVQALKTFP KETSQRWERV ATAVPGKTMN QCKKKFALLK ENFRNKKSAV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5dje_A1e-1918629613123Zuotin
5dje_B1e-1918629613123Zuotin
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755130.0HG975513.1 Solanum lycopersicum chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016538304.10.0PREDICTED: dnaJ homolog subfamily C member 2-like
RefseqXP_016538305.10.0PREDICTED: dnaJ homolog subfamily C member 2-like
RefseqXP_016538306.10.0PREDICTED: dnaJ homolog subfamily C member 2-like
TrEMBLA0A2G2W7050.0A0A2G2W705_CAPBA; Uncharacterized protein
STRINGPGSC0003DMT4000085150.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA95572225
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G11450.11e-121DnaJ domain ;Myb-like DNA-binding domain