PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peaxi162Scf00126g00813.1

Organism

Petunia axillaris

Taxonomic ID

33119

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia

Family

Nin-like

Protein Properties

Length: 992aa MW: 108165 Da PI: 5.5503

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peaxi162Scf00126g00813.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	91.8	5e-29	599	650	1	52
RWP-RK 1 aekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 aek++sl++l++yFs+++kdAAk++gvc+T+LKriCRq+GI+RWP+Rki+++ Peaxi162Scf00126g00813.1 599 AEKHVSLSVLQQYFSGSLKDAAKSIGVCPTTLKRICRQHGISRWPSRKINKV 650 5899**********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	16.984	582	670	IPR003035	RWP-RK domain
Pfam	PF02042	4.1E-26	603	650	IPR003035	RWP-RK domain
SuperFamily	SSF54277	4.58E-22	888	975	No hit	No description
PROSITE profile	PS51745	19.007	892	974	IPR000270	PB1 domain
SMART	SM00666	2.5E-22	892	974	IPR000270	PB1 domain
Pfam	PF00564	1.8E-18	893	973	IPR000270	PB1 domain
CDD	cd06407	5.33E-33	893	973	No hit	No description
Gene3D	G3DSA:3.10.20.240	3.4E-24	893	974	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 992 aa Download sequence Send to blast
MERGVGFWAS PRGQMEGGTA FDAGVRSSNV DDSYNNVMEI MNFDAYAGWC TSPSAAEQMF 60 ASYAAAFSSP MNPVSQSYAQ YEGLSYTEQN TSGAFPPMDT NMGGSTLGGA EKMMFGQNDE 120 QLHYVVDSTD GVRLLAKRSK NSSQQGDDDD DIGNSMILKS PSQPLAERML RVLAMFKESS 180 GAGILAQVWI PMRSGDQYVL STCEQPYLLD QALSGYREVS RKFTFDTDTK TGSIPGLPGR 240 VFSSRIPEWT SNVLYYKEAE YLRVQYAVNH DVRGSIALPI FEDDAAETPC CAVLELVTVK 300 EKPNFDLEMD HVCRALQAVN LKSIAPPRLH SQSLSKNQRA ALAEIADVLR AVCHAHKLPL 360 ALTWIPCSVN EGEGDETIRV HTRGWNANSL AKCVLCVEDT ACYVSDKEMQ GFVHACMEHY 420 LEVGEGIVGK ALQSNHPFFY PDVKEYHISE YPVAHHARKF GLNAAVAIRL RSTFTGNDDY 480 ILEFFLPISM KGSTEQQLLL NNLSGTMQRI CRSLRTVSDA ELVGQGAKFG LQDGSVQNLP 540 PIALLRRNSQ HSLDSNSNSE SGEPLGVCDS MTAGIEANGS HEQTMTGSRR PMEKKRSTAE 600 KHVSLSVLQQ YFSGSLKDAA KSIGVCPTTL KRICRQHGIS RWPSRKINKV NRSLKKIQTV 660 LESVQGVEGG LKFDPATGGL VPAGSIIHDF DAQQQSIFFP CKDVSVKNPN SVFQEAVTVP 720 STSSIEKESS MVKMEEESYV DGNQFSQSNH INTSSFKEGN TSNIPVSGSS GPASLNTMPL 780 TSSENARLGS FAKEGCRRWG LNTDTLAHSD CQFTSGCSYP MAPGGIADNK MKGDNEMDGD 840 GGVEHNQPSS SAMTDSSNGS GSMMNGSSSS SRNVGARKHS KVEASCVDSG SIITVKATYK 900 EDTTRFKFEP SAGCFQLYEE VAKRFKLQTG TFQLKYLDDE EEWVMLVNDA DLHECLEILD 960 FVGGRTVKFL VRDTPITMGS SGSSNCFLAG GS

Sequence ? help Back to Top

Protein Sequence Length: 992 aa Download sequence Send to blast

MERGVGFWAS PRGQMEGGTA FDAGVRSSNV DDSYNNVMEI MNFDAYAGWC TSPSAAEQMF  60
ASYAAAFSSP MNPVSQSYAQ YEGLSYTEQN TSGAFPPMDT NMGGSTLGGA EKMMFGQNDE  120
QLHYVVDSTD GVRLLAKRSK NSSQQGDDDD DIGNSMILKS PSQPLAERML RVLAMFKESS  180
GAGILAQVWI PMRSGDQYVL STCEQPYLLD QALSGYREVS RKFTFDTDTK TGSIPGLPGR  240
VFSSRIPEWT SNVLYYKEAE YLRVQYAVNH DVRGSIALPI FEDDAAETPC CAVLELVTVK  300
EKPNFDLEMD HVCRALQAVN LKSIAPPRLH SQSLSKNQRA ALAEIADVLR AVCHAHKLPL  360
ALTWIPCSVN EGEGDETIRV HTRGWNANSL AKCVLCVEDT ACYVSDKEMQ GFVHACMEHY  420
LEVGEGIVGK ALQSNHPFFY PDVKEYHISE YPVAHHARKF GLNAAVAIRL RSTFTGNDDY  480
ILEFFLPISM KGSTEQQLLL NNLSGTMQRI CRSLRTVSDA ELVGQGAKFG LQDGSVQNLP  540
PIALLRRNSQ HSLDSNSNSE SGEPLGVCDS MTAGIEANGS HEQTMTGSRR PMEKKRSTAE  600
KHVSLSVLQQ YFSGSLKDAA KSIGVCPTTL KRICRQHGIS RWPSRKINKV NRSLKKIQTV  660
LESVQGVEGG LKFDPATGGL VPAGSIIHDF DAQQQSIFFP CKDVSVKNPN SVFQEAVTVP  720
STSSIEKESS MVKMEEESYV DGNQFSQSNH INTSSFKEGN TSNIPVSGSS GPASLNTMPL  780
TSSENARLGS FAKEGCRRWG LNTDTLAHSD CQFTSGCSYP MAPGGIADNK MKGDNEMDGD  840
GGVEHNQPSS SAMTDSSNGS GSMMNGSSSS SRNVGARKHS KVEASCVDSG SIITVKATYK  900
EDTTRFKFEP SAGCFQLYEE VAKRFKLQTG TFQLKYLDDE EEWVMLVNDA DLHECLEILD  960
FVGGRTVKFL VRDTPITMGS SGSSNCFLAG GS

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009795771.1	0.0	PREDICTED: protein NLP9-like
Refseq	XP_009795773.1	0.0	PREDICTED: protein NLP9-like
Refseq	XP_009795774.1	0.0	PREDICTED: protein NLP9-like
Refseq	XP_009795775.1	0.0	PREDICTED: protein NLP9-like
Refseq	XP_009795776.1	0.0	PREDICTED: protein NLP9-like
Refseq	XP_009795777.1	0.0	PREDICTED: protein NLP9-like
Refseq	XP_009795778.1	0.0	PREDICTED: protein NLP9-like
Swissprot	O22864	0.0	NLP8_ARATH; Protein NLP8
TrEMBL	A0A1U7XXY1	0.0	A0A1U7XXY1_NICSY; protein NLP9-like
STRING	XP_009795771.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3981	24	45

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43500.2	0.0	Nin-like family protein

Publications ? help Back to Top
Yan D, et al. NIN-like protein 8 is a master regulator of nitrate-promoted seed germination in Arabidopsis. Nat Commun, 2016. 7: p. 13179 [PMID:27731416]