PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peaxi162Scf00102g00189.1

Organism

Petunia axillaris

Taxonomic ID

33119

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia

Family

Nin-like

Protein Properties

Length: 996aa MW: 108969 Da PI: 5.719

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peaxi162Scf00102g00189.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	83.5	1.9e-26	590	650	1	52
RWP-RK 1 aekeisledlskyFslpikdAAkeLg.........vclTvLKriCRqyGIkRWPhRkiksl 52 aek+isle+l++yF++++kdAAk+Lg vc+T++KriCR++GI+RWP+Rki+++ Peaxi162Scf00102g00189.1 590 AEKTISLEVLQQYFAGSLKDAAKSLGtilidvattVCPTTMKRICRHHGISRWPSRKINKV 650 589********************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	15.664	575	670	IPR003035	RWP-RK domain
Pfam	PF02042	1.7E-23	593	650	IPR003035	RWP-RK domain
Gene3D	G3DSA:3.10.20.240	1.0E-22	898	979	No hit	No description
SuperFamily	SSF54277	8.97E-20	898	984	No hit	No description
SMART	SM00666	8.6E-24	898	980	IPR000270	PB1 domain
PROSITE profile	PS51745	23.782	898	980	IPR000270	PB1 domain
Pfam	PF00564	1.6E-18	899	979	IPR000270	PB1 domain
CDD	cd06407	2.92E-30	899	979	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 996 aa Download sequence Send to blast
MSEAEEKNFP PKSKEYFRES VLMDLDVDMD ASWTFDQIFA AAADPTSPFQ IFGSSEQQRP 60 CSPLWAFSDE NDHKPALRLS SHPTFLSYNM DPEATAETVS VNVDKGRPTP PSSGITPRGY 120 PDGSCIIKER MTQALRNFKE STRERVLAQV WAPVKDGCRY VLTTSGQPFV LDPNCNGLHQ 180 YRTVSLMYMF AADGETDGVL GLPGRVFRLK LPEWTPNVQY YSSKEFSRLN HALHYNVQGT 240 LALPVFEPSG QSCVGVLELI MTSQKINYAA EVDKVCKALE AVNLKSSEIL DHPNTQVYVM 300 GYMNQICNEG RQKALVEILE ILTTVCETYN LPLAQTWVPC RHRSVLADGG GLKKSCSSFD 360 GSCMGQICMS TTDVAFYVVD AHMWGFREAC VEHHLQKGQG VAGRAYASQK SCFCEDITQF 420 CKTEYPLVHY ARLFGLTSCL AICLRSSHTG HDDYILEFFL PPNSGDYSDQ QALLNSLFST 480 MKQHFRSLSI GSGGELEHDW GSVEIVKAST EEKLDKKPES TPTPKSLPQD TTLPNGWTPL 540 DLLGEEQLAV GSNVAKGAGS TSGAGEASNH ASFSDKKATG KKSEKKRGKA EKTISLEVLQ 600 QYFAGSLKDA AKSLGTILID VATTVCPTTM KRICRHHGIS RWPSRKINKV NRSLSKLKCV 660 IESVQGAEGA FTLTSLAPNS LPAAVGSISW PAGGNGSDLP RSPSSKPSVF PEGPEEAEPS 720 SPMPRGRVAR KEELTLQNGF LHAEGSHKSR TGSVSREDST GTPISHGSCQ GSPSTGNEFS 780 PQNELVNSPA HESCMKVAGS LEAANETTTE INLSAAFLMP RPSIPEQSRE PFGVMLVEDA 840 GSSHDLRNLC SAGDALADER VPEYNLTNPP FSDAIAKDPD YVPPETKLQY FARPEVTSIT 900 IKATYRENII RFRLCSNSGV DKLKEEVAKR VKLEQGTFDI KYQDDDLEIV SVSCDADLEE 960 CVDISRSSGS NIVRLLIHDI MPNLGSSCES SGKCYL

Sequence ? help Back to Top

Protein Sequence Length: 996 aa Download sequence Send to blast

MSEAEEKNFP PKSKEYFRES VLMDLDVDMD ASWTFDQIFA AAADPTSPFQ IFGSSEQQRP  60
CSPLWAFSDE NDHKPALRLS SHPTFLSYNM DPEATAETVS VNVDKGRPTP PSSGITPRGY  120
PDGSCIIKER MTQALRNFKE STRERVLAQV WAPVKDGCRY VLTTSGQPFV LDPNCNGLHQ  180
YRTVSLMYMF AADGETDGVL GLPGRVFRLK LPEWTPNVQY YSSKEFSRLN HALHYNVQGT  240
LALPVFEPSG QSCVGVLELI MTSQKINYAA EVDKVCKALE AVNLKSSEIL DHPNTQVYVM  300
GYMNQICNEG RQKALVEILE ILTTVCETYN LPLAQTWVPC RHRSVLADGG GLKKSCSSFD  360
GSCMGQICMS TTDVAFYVVD AHMWGFREAC VEHHLQKGQG VAGRAYASQK SCFCEDITQF  420
CKTEYPLVHY ARLFGLTSCL AICLRSSHTG HDDYILEFFL PPNSGDYSDQ QALLNSLFST  480
MKQHFRSLSI GSGGELEHDW GSVEIVKAST EEKLDKKPES TPTPKSLPQD TTLPNGWTPL  540
DLLGEEQLAV GSNVAKGAGS TSGAGEASNH ASFSDKKATG KKSEKKRGKA EKTISLEVLQ  600
QYFAGSLKDA AKSLGTILID VATTVCPTTM KRICRHHGIS RWPSRKINKV NRSLSKLKCV  660
IESVQGAEGA FTLTSLAPNS LPAAVGSISW PAGGNGSDLP RSPSSKPSVF PEGPEEAEPS  720
SPMPRGRVAR KEELTLQNGF LHAEGSHKSR TGSVSREDST GTPISHGSCQ GSPSTGNEFS  780
PQNELVNSPA HESCMKVAGS LEAANETTTE INLSAAFLMP RPSIPEQSRE PFGVMLVEDA  840
GSSHDLRNLC SAGDALADER VPEYNLTNPP FSDAIAKDPD YVPPETKLQY FARPEVTSIT  900
IKATYRENII RFRLCSNSGV DKLKEEVAKR VKLEQGTFDI KYQDDDLEIV SVSCDADLEE  960
CVDISRSSGS NIVRLLIHDI MPNLGSSCES SGKCYL

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in regulation of nitrate assimilation and in transduction of the nitrate signal. {ECO:0000269\|PubMed:18826430}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Not regulated by the N source or by nitrate. {ECO:0000269\|PubMed:18826430}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975520	0.0	HG975520.1 Solanum lycopersicum chromosome ch08, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016436661.1	0.0	PREDICTED: protein NLP6-like isoform X3
Swissprot	Q84TH9	0.0	NLP7_ARATH; Protein NLP7
TrEMBL	A0A1S3X9S0	0.0	A0A1S3X9S0_TOBAC; protein NLP6-like isoform X3
STRING	XP_009599820.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA5223	22	39

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24020.1	0.0	NIN like protein 7

Publications ? help Back to Top
Xu N, et al. The Arabidopsis NRG2 Protein Mediates Nitrate Signaling and Interacts with and Regulates Key Nitrate Regulators. Plant Cell, 2016. 28(2): p. 485-504 [PMID:26744214] Karve R,Suárez-Román F,Iyer-Pascuzzi AS The Transcription Factor NIN-LIKE PROTEIN7 Controls Border-Like Cell Release. Plant Physiol., 2016. 171(3): p. 2101-11 [PMID:27221617] Yu LH, et al. Overexpression of Arabidopsis NLP7 improves plant growth under both nitrogen-limiting and -sufficient conditions by enhancing nitrogen and carbon assimilation. Sci Rep, 2016. 6: p. 27795 [PMID:27293103] Menz J,Li Z,Schulze WX,Ludewig U Early nitrogen-deprivation responses in Arabidopsis roots reveal distinct differences on transcriptome and (phospho-) proteome levels between nitrate and ammonium nutrition. Plant J., 2016. 88(5): p. 717-734 [PMID:27419465] Yan D, et al. NIN-like protein 8 is a master regulator of nitrate-promoted seed germination in Arabidopsis. Nat Commun, 2016. 7: p. 13179 [PMID:27731416] Guan P, et al. Interacting TCP and NLP transcription factors control plant responses to nitrate availability. Proc. Natl. Acad. Sci. U.S.A., 2017. 114(9): p. 2419-2424 [PMID:28202720] Liu KH, et al. Discovery of nitrate-CPK-NLP signalling in central nutrient-growth networks. Nature, 2017. 545(7654): p. 311-316 [PMID:28489820] Li Z, et al. The Arabidopsis CPSF30-L gene plays an essential role in nitrate signaling and regulates the nitrate transceptor gene NRT1.1. New Phytol., 2017. 216(4): p. 1205-1222 [PMID:28850721] Cao H, et al. Overexpression of the Maize ZmNLP6 and ZmNLP8 Can Complement the Arabidopsis Nitrate Regulatory Mutant nlp7 by Restoring Nitrate Signaling and Assimilation. Front Plant Sci, 2017. 8: p. 1703 [PMID:29051766] Konishi N,Okubo T,Yamaya T,Hayakawa T,Minamisawa K Nitrate Supply-Dependent Shifts in Communities of Root-Associated Bacteria in Arabidopsis. Microbes Environ., 2017. 32(4): p. 314-323 [PMID:29187692] Karve RA,Iyer-Pascuzzi AS Further insights into the role of NIN-LIKE PROTEIN 7 (NLP7) in root cap cell release. Plant Signal Behav, 2018. 13(1): p. e1414122 [PMID:29215953] Zhao L, et al. The Arabidopsis NLP7 gene regulates nitrate signaling via NRT1.1-dependent pathway in the presence of ammonium. Sci Rep, 2018. 8(1): p. 1487 [PMID:29367694]