PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00067g02114.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family C3H
Protein Properties Length: 432aa    MW: 46772.1 Da    PI: 8.6938
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00067g02114.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH27.65.1e-094874127
                              --S---SGGGGTS--TTTTT-SS-SSS CS
                   zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHgp 27
                              ++ + C+++ +tGtC yG+ C+++H++
  Peaxi162Scf00067g02114.1 48 PGVPDCSYYIKTGTCGYGGICRYNHPR 74
                              5789*********************96 PP
2zf-CCCH37.53.9e-1295119327
                               S---SGGGGTS--TTTTT-SS-SSS CS
                   zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                               ++ C++++rtG Ck+G+ CkF+H++
  Peaxi162Scf00067g02114.1  95 EPTCQYYLRTGNCKFGAACKFHHPR 119
                               789********************96 PP
3zf-CCCH32.51.5e-10143165527
                               --SGGGGTS--TTTTT-SS-SSS CS
                   zf-CCCH   5 lCrffartGtCkyGdrCkFaHgp 27 
                               +C+++++tG+Ck+G +Ck++H++
  Peaxi162Scf00067g02114.1 143 ECSYYLKTGHCKFGITCKYHHPQ 165
                               7********************97 PP
4zf-CCCH37.54e-12295321127
                               --S---SGGGGTS--TTTTT-SS-SSS CS
                   zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                               ++++ C+++++tG Ck+G++C+++H+p
  Peaxi162Scf00067g02114.1 295 PGQPTCQYYMKTGDCKFGSSCRYHHPP 321
                               57899********************97 PP
5zf-CCCH27.84.4e-09342367227
                               -S---SGGGGTS--TTTTT-SS-SSS CS
                   zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                               +  +C+f++  G+Ck+G  CkF H++
  Peaxi162Scf00067g02114.1 342 GVQPCSFYLLKGFCKFGRACKFDHPM 367
                               6789********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010312.3244775IPR000571Zinc finger, CCCH-type
SMARTSM003560.00164774IPR000571Zinc finger, CCCH-type
PfamPF006428.1E-64974IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.19E-55175IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.9992120IPR000571Zinc finger, CCCH-type
SMARTSM003564.0E-692119IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.85E-695120IPR000571Zinc finger, CCCH-type
PfamPF006421.2E-995119IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.8E-498119IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.446138166IPR000571Zinc finger, CCCH-type
SMARTSM003561.5E-4138165IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.57E-5141166IPR000571Zinc finger, CCCH-type
PfamPF006426.9E-8143165IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.239294322IPR000571Zinc finger, CCCH-type
SMARTSM003561.8E-6294321IPR000571Zinc finger, CCCH-type
PfamPF006422.5E-9296321IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.89E-6298322IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.0E-4300320IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.587340368IPR000571Zinc finger, CCCH-type
SMARTSM003567.1E-6340367IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.49E-5342368IPR000571Zinc finger, CCCH-type
PfamPF006421.0E-6342367IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.6E-4344365IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 432 aa     Download sequence    Send to blast
MELYGRSNGS NNGSQSDHHS DWVPQTGLDE SSMQRMGLWG REIYPERPGV PDCSYYIKTG  60
TCGYGGICRY NHPRDRSSGG KMQLGGVEYP ERLGEPTCQY YLRTGNCKFG AACKFHHPRN  120
LGGSLINITL NTCGYPLRPG EMECSYYLKT GHCKFGITCK YHHPQPAGIS VPAPARPFYP  180
TVQPLAAPAE EYHSTSTGFK VAKPPLLPGS YVPSAYGPVL LHPGVVTIQN WSPYSGPASP  240
ALSPGAQPSA GVTSIYGISQ LASSTHVFAG PYSPLYSAAS PSSKTQKEKS FPERPGQPTC  300
QYYMKTGDCK FGSSCRYHHP PDWIASNTNC AVGPLGLPLR PGVQPCSFYL LKGFCKFGRA  360
CKFDHPMGTV SYSSSVSALP DLPIAPYMLR SSFTFAPNLM SELQPGFISG SKVETSLSRA  420
PSSLKVQLVE LT
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009776613.10.0PREDICTED: zinc finger CCCH domain-containing protein 32-like isoform X1
RefseqXP_016506824.10.0PREDICTED: zinc finger CCCH domain-containing protein 32-like isoform X1
SwissprotQ84W911e-161C3H32_ARATH; Zinc finger CCCH domain-containing protein 32
TrEMBLA0A1S4D0M40.0A0A1S4D0M4_TOBAC; zinc finger CCCH domain-containing protein 32-like isoform X1
TrEMBLA0A1U7WD870.0A0A1U7WD87_NICSY; zinc finger CCCH domain-containing protein 32-like isoform X1
STRINGXP_009776613.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA66222034
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47850.31e-157C3H family protein