PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MA_934266g0010

Organism

Picea abies

Taxonomic ID

3329

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea

Family

Trihelix

Protein Properties

Length: 498aa MW: 57960.7 Da PI: 8.117

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MA_934266g0010	genome	ConGenIE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	34.4	5.6e-11	291	335	1	45
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergfer 45 rW++ ev aLi++r++m++r++++ + +lWee+s++m + + + MA_934266g0010 291 RWPRPEVYALIKLRSDMDQRFKESGPRVALWEEISSAMLDSLYDK 335 8*************************************7765554 PP

Sequence ? help Back to Top
Protein Sequence Length: 498 aa Download sequence Send to blast
MHERHILSCY CNLCAVSLQR WGSTEVQRSA RKNLRMSINT TRKEKFENVY KYYKKTKDGR 60 INRQDGKSYR FCSEIEALYA GVSVKNSGID KDADIGACSD GNIRNQGVMK NPSSLLINNI 120 NQLQEETTFP RSTESIDNAR KNLSSDGTST EEDLGKSKSE MQINRKRRKR KQSLSSIKDL 180 LENMIKRWME RQESSQKKFL EAIEKRDQDR LIREEAWKLQ EMARLNRETE LRAQEHALQS 240 SREKAIIEYL EKLTSQNFKL DPRIIPMQST PNAQEDENNT ARGKIDLHSN RWPRPEVYAL 300 IKLRSDMDQR FKESGPRVAL WEEISSAMLD SLYDKGVLLS PNHPKYDNKL ENTSNSEALT 360 GIDGDDDDQE RGQEMKVNDQ DPELLAIVAA STQRTVQPES TSSERMEYLA QKMMKWNPTV 420 IQTMDDQAVS VNSRPSSEYL GRSNNDNNNK RFRMGRLVQE GLEPQQNQYR KFLDECRRRE 480 HEEQHLTDKE VGHHQQQQ

Sequence ? help Back to Top

Protein Sequence Length: 498 aa Download sequence Send to blast

MHERHILSCY CNLCAVSLQR WGSTEVQRSA RKNLRMSINT TRKEKFENVY KYYKKTKDGR  60
INRQDGKSYR FCSEIEALYA GVSVKNSGID KDADIGACSD GNIRNQGVMK NPSSLLINNI  120
NQLQEETTFP RSTESIDNAR KNLSSDGTST EEDLGKSKSE MQINRKRRKR KQSLSSIKDL  180
LENMIKRWME RQESSQKKFL EAIEKRDQDR LIREEAWKLQ EMARLNRETE LRAQEHALQS  240
SREKAIIEYL EKLTSQNFKL DPRIIPMQST PNAQEDENNT ARGKIDLHSN RWPRPEVYAL  300
IKLRSDMDQR FKESGPRVAL WEEISSAMLD SLYDKGVLLS PNHPKYDNKL ENTSNSEALT  360
GIDGDDDDQE RGQEMKVNDQ DPELLAIVAA STQRTVQPES TSSERMEYLA QKMMKWNPTV  420
IQTMDDQAVS VNSRPSSEYL GRSNNDNNNK RFRMGRLVQE GLEPQQNQYR KFLDECRRRE  480
HEEQHLTDKE VGHHQQQQ

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	164	170	RKRRKRK
2	164	171	RKRRKRKQ

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT112275	0.0	BT112275.1 Picea glauca clone GQ03312_N09 mRNA sequence.

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP663	15	73

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76890.2	6e-31	Trihelix family protein