PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_6407g0010
Organism
Picea abies
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family bZIP
Protein Properties Length: 507aa    MW: 54581.6 Da    PI: 8.3768
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_6407g0010genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_132.81.5e-10323381563
                   CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
        bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                   kr++r   NR +A rs +RK  +i eLe+kv++L++e ++L  +l +l+     l++e+
  MA_6407g0010 323 KRAKRIWANRQSAARSKERKMRYISELERKVQTLQTEATTLSAQLTMLQRDTTGLTNEN 381
                   9**********************************************999888877776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003384.2E-16319383IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.99321384IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1709.8E-11323378No hitNo description
SuperFamilySSF579594.01E-11323375No hitNo description
PfamPF001708.7E-9323378IPR004827Basic-leucine zipper domain
CDDcd147031.36E-26324373No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 507 aa     Download sequence    Send to blast
MEKAGEGYEG IVGQPDLHGK NSNNNNNSKS NHNHNHNNNN NIGISSAQPT SGGGFNPHSS  60
QSQPSQPPSR YVGYPSTTNA FTVKRDPSPV PSPSSGPSLS PAPSVSSMRS TASHSVDIQM  120
QDSASSPVPK SLPSNTKLPT MSPHHFSTDV NKMPDIPPPF HCRLFLLVDS TKIGPSVSGG  180
LCVLLTMISS HPLSDETGND LFSMYVDMDK FTGFLASSTH AMTATTPSGS EGGLTPPSQS  240
THHSRSVSMD GVFSGFQNNN SGFGPGGVTS DKPRARHQHS QSMDGFPSIK PELLLSTAEA  300
SLAETKKAMS AAKLADLALI DPKRAKRIWA NRQSAARSKE RKMRYISELE RKVQTLQTEA  360
TTLSAQLTML QRDTTGLTNE NSELKLRLQS MEQQVHLRDA LNDALREEVQ RLKLATGQGL  420
ANGGHMMNYC SSFTPTQPFF QVPHQSSHTY LAAQQLQHLH LQSHQSALNL RNGGTGSSQG  480
HRDNLSDFGM TTEGLPVSTS QEAGCNF
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor with an activatory role.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00126DAPTransfer from AT1G06070Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010268265.11e-106PREDICTED: probable transcription factor PosF21
RefseqXP_010268266.11e-106PREDICTED: probable transcription factor PosF21
RefseqXP_010268267.11e-106PREDICTED: probable transcription factor PosF21
SwissprotQ040885e-82POF21_ARATH; Probable transcription factor PosF21
TrEMBLA0A2R6XND51e-113A0A2R6XND5_MARPO; Uncharacterized protein
STRINGXP_010268265.11e-105(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP12617181
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G06070.13e-81bZIP family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Xu C, et al.
    Control of auxin-induced callus formation by bZIP59-LBD complex in Arabidopsis regeneration.
    Nat Plants, 2018. 4(2): p. 108-115
    [PMID:29358751]